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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:1764.2TPM
GTEx:624.8RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Low
Neuronal cells:Low
Neuropil:High
 

Antibody staining

Antibody HPA001830

 

Antibody CAB000360

 

Endothelial cells

Not detected   Not detected  

Glial cells

Medium   Not detected  

Neuronal cells

Medium   Not detected  

Neuropil

High   High  
   
   
   

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

1764.2

N/A Male, age 5
Sample 1
TPM: 2388.0
overview Female, age 40
Sample 2
TPM: 752.7
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 2152.0
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

624.8

GTEx sample id

RPKM

282.5421.4545.474.8852.50100200300400500600700800
 
282.5421.4545.474.8852.50100200300400500600700800

Brain - Cortex

Brain - Cortex
RPKM: 416.7
Samples: 114

Max RPKM: 852.5
Min RPKM: 74.8
Std RPKM: 163.9
Median RPKM: 421.3
GTEX-PVOW-2526-SM-2XCF7 852.5
GTEX-11DXY-3226-SM-5GIDE 749.6
GTEX-WL46-2926-SM-3LK82 718.4
GTEX-Y8DK-0826-SM-4TT3T 710.3
GTEX-TSE9-3026-SM-3DB76 699.0
GTEX-11ZUS-2926-SM-5FQSL 682.2
GTEX-WVLH-3026-SM-3MJG9 655.3
GTEX-13FXS-3126-SM-5J2NN 646.3
GTEX-11PRG-2926-SM-5987A 635.6
GTEX-14BMV-3026-SM-5S2PQ 635.1
GTEX-T2IS-3026-SM-32QPM 634.4
GTEX-13NYC-2826-SM-5K7WR 633.6
GTEX-T5JC-2426-SM-3NMDB 632.7
GTEX-145MH-3026-SM-5Q5DZ 622.7
GTEX-1313W-3126-SM-5LZUI 610.5
GTEX-11NUK-2926-SM-5A5MD 605.0
GTEX-WWYW-3126-SM-3NB39 603.0
GTEX-YFC4-3126-SM-5PNV6 601.1
GTEX-UTHO-3026-SM-3GAFB 600.0
GTEX-131YS-3126-SM-5KLYT 592.2
GTEX-12ZZX-2926-SM-5GCOQ 581.7
GTEX-ZAK1-3026-SM-5S2MJ 570.7
GTEX-QMR6-1426-SM-32PLA 570.1
GTEX-WZTO-2926-SM-3NM9I 565.3
GTEX-Z93S-2926-SM-57WB9 556.4
GTEX-WHSE-3026-SM-3P5ZH 553.0
GTEX-13FLW-1426-SM-5K7YE 549.8
GTEX-117XS-3026-SM-5N9CA 547.6
GTEX-14ASI-3026-SM-5S2PN 546.4
GTEX-13OVH-3026-SM-5MR4N 542.4
GTEX-X585-3026-SM-46MWF 542.1
GTEX-145LS-3126-SM-5Q5BY 539.0
GTEX-13FHO-3026-SM-5J1O9 529.4
GTEX-11O72-2926-SM-5BC4V 525.9
GTEX-13O3O-3126-SM-5KM3H 525.8
GTEX-ZUA1-3026-SM-59HJC 514.4
GTEX-13VXU-2926-SM-5LU5C 503.7
GTEX-T6MN-2626-SM-32PMQ 499.3
GTEX-13OW6-3026-SM-5J2MI 487.7
GTEX-1399T-3026-SM-5KLZC 481.2
GTEX-11OF3-2926-SM-5HL78 481.0
GTEX-12WSC-3026-SM-5GCNF 476.7
GTEX-13O3Q-2926-SM-5KM45 475.7
GTEX-12126-1026-SM-5P9JJ 474.8
GTEX-RNOR-2326-SM-2TF4I 474.5
GTEX-13X6J-3026-SM-5Q5CU 457.6
GTEX-XLM4-3026-SM-4AT6L 457.5
GTEX-13SLX-3126-SM-5S2Q5 457.0
GTEX-ZYFD-3026-SM-5E44C 446.2
GTEX-145MG-3026-SM-5RQJA 441.3
GTEX-12ZZZ-3026-SM-5BC67 436.8
GTEX-11NV4-2126-SM-5N9DS 436.1
GTEX-XOTO-3026-SM-4B65M 435.8
GTEX-111FC-3126-SM-5GZZ2 433.5
GTEX-X4XX-3026-SM-3NMB2 426.8
GTEX-13NYS-3126-SM-5KLYV 424.2
GTEX-145MF-2726-SM-5O995 424.2
GTEX-13NYB-3026-SM-5IJD7 418.5
GTEX-132Q8-3026-SM-5PNVG 413.0
GTEX-13FHP-3026-SM-5IJBS 409.7
GTEX-13PL6-3126-SM-5LUAR 401.1
GTEX-RU72-3026-SM-5SI7Y 388.3
GTEX-ZVT3-3026-SM-5E43N 386.8
GTEX-Y111-2726-SM-4TT3N 384.9
GTEX-12WSH-3026-SM-5CVNI 384.7
GTEX-R55F-1326-SM-5S2V4 382.1
GTEX-1128S-2726-SM-5H12C 380.6
GTEX-11GSO-2926-SM-5HL73 379.7
GTEX-QVJO-1426-SM-2S1QY 371.6
GTEX-11DXW-1126-SM-5H12Q 368.9
GTEX-QDT8-2926-SM-32PKC 367.4
GTEX-YJ89-3026-SM-5IFJI 366.7
GTEX-12ZZY-3026-SM-5GCOU 366.6
GTEX-144GL-3026-SM-5Q5CW 366.1
GTEX-11WQK-3026-SM-5EQL6 362.9
GTEX-11OC5-0726-SM-5P9JK 340.1
GTEX-QVUS-2826-SM-3GADB 329.4
GTEX-11ONC-2926-SM-5P9JM 329.0
GTEX-14A5I-2926-SM-5Q5CQ 327.7
GTEX-13QIC-2926-SM-5J2NF 319.1
GTEX-13X6K-2926-SM-5Q5D5 315.4
GTEX-13OW8-2826-SM-5L3GC 313.1
GTEX-ZE7O-3126-SM-5HL5X 303.9
GTEX-Q2AG-2926-SM-2HMJ3 300.0
GTEX-1192X-3126-SM-5N9BY 290.5
GTEX-11EI6-3026-SM-5GZZO 279.8
GTEX-11EMC-3226-SM-5EGKW 272.8
GTEX-ZAJG-3126-SM-5HL9J 261.4
GTEX-12ZZW-2926-SM-5LZUP 260.8
GTEX-13S7M-3126-SM-5RQJQ 256.7
GTEX-11GS4-3126-SM-5A5LH 255.4
GTEX-13JUV-2926-SM-5LZX7 245.8
GTEX-13PVQ-3026-SM-5SI93 245.2
GTEX-OXRN-2426-SM-2I5EQ 243.0
GTEX-147GR-3026-SM-5S2ML 237.0
GTEX-13OW7-3026-SM-5L3GY 235.5
GTEX-13JVG-3126-SM-5L3FH 223.2
GTEX-NPJ8-1526-SM-2D7VU 221.2
GTEX-13OVJ-2826-SM-5L3GW 219.1
GTEX-131XW-3126-SM-5LZUC 217.0
GTEX-ZZPT-3026-SM-5GZXH 203.1
GTEX-12WSD-3126-SM-5HL7P 202.1
GTEX-N7MT-1126-SM-5SI7V 200.4
GTEX-NPJ7-2726-SM-2I3FT 192.6
GTEX-139T8-1026-SM-5J2MC 188.2
GTEX-13G51-3026-SM-5IJB8 188.0
GTEX-11TTK-2926-SM-5PNYP 181.9
GTEX-PWO3-0926-SM-2I5EY 156.7
GTEX-1117F-3226-SM-5N9CT 152.8
GTEX-11GSP-3226-SM-5986O 141.6
GTEX-144FL-3026-SM-5O99C 131.0
GTEX-13IVO-2926-SM-5L3CZ 124.4
GTEX-12WSA-2926-SM-5EQ4D 114.1
GTEX-1445S-3026-SM-5O9BR 74.8
Show all
548.8910.01139.182.21556.602004006008001,0001,2001,400
 
548.8910.01139.182.21556.602004006008001,0001,2001,400

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 844.5
Samples: 108

Max RPKM: 1556.6
Min RPKM: 82.2
Std RPKM: 361
Median RPKM: 909.9
GTEX-12WSE-0011-R10b-SM-5P9JV 1556.6
GTEX-T6MN-0011-R10A-SM-32QP7 1520.9
GTEX-145MH-0011-R10b-SM-5PNUK 1463.7
GTEX-WL46-0011-R10A-SM-3MJFQ 1460.8
GTEX-WVLH-0011-R10A-SM-3MJFM 1367.5
GTEX-X585-0011-R10A-SM-46MUY 1360.2
GTEX-QDT8-0011-R10A-SM-32PKG 1296.7
GTEX-Y8DK-0011-R10A-SM-4SOK1 1289.6
GTEX-S7SE-0011-R10A-SM-2XCDF 1283.3
GTEX-145MG-0011-R10a-SM-5PNWG 1277.3
GTEX-WWYW-0011-R10A-SM-3NB35 1266.1
GTEX-WZTO-0011-R10B-SM-4E3KB 1265.0
GTEX-13RTJ-0011-R10b-SM-5O9CW 1260.9
GTEX-12WSC-0011-R10a-SM-5GU57 1251.3
GTEX-13NYB-0011-R10a-SM-5KM43 1242.2
GTEX-1313W-0011-R10b-SM-5DUXA 1210.2
GTEX-13X6J-0011-R10b-SM-5PNWA 1209.5
GTEX-13O3Q-0011-R10b-SM-5KM39 1185.2
GTEX-12ZZX-0011-R10b-SM-5DUWK 1179.1
GTEX-131YS-0011-R10b-SM-5EQ5N 1166.9
GTEX-T5JC-0011-R10A-SM-32PM2 1157.8
GTEX-131XH-0011-R10a-SM-5EGLJ 1150.3
GTEX-YFC4-0011-R10a-SM-4SOK5 1146.9
GTEX-14ASI-0011-R10b-SM-5S2VZ 1146.3
GTEX-ZVZQ-0011-R10b-SM-51MRT 1146.0
GTEX-11H98-0011-R10b-SM-5NQ98 1142.3
GTEX-14BIN-0011-R10a-SM-5S2UA 1140.4
GTEX-QMR6-0011-R10A-SM-32PKO 1138.7
GTEX-13QIC-0011-R10a-SM-5O9C7 1103.8
GTEX-13FHO-0011-R10b-SM-5J2MM 1100.6
GTEX-12ZZZ-0011-R10a-SM-5P9HC 1084.0
GTEX-QVUS-0011-R10A-SM-3GIK3 1081.6
GTEX-NL3H-0011-R10A-SM-2I3E9 1078.3
GTEX-13S7M-0011-R10b-SM-5PNZB 1057.2
GTEX-145LS-0011-R10a-SM-5PNUQ 1052.9
GTEX-12ZZY-0011-R10b-SM-5HL7W 1039.2
GTEX-132Q8-0011-R10b-SM-5DUWZ 1035.1
GTEX-N7MS-0011-R10A-SM-2HMJK 1028.6
GTEX-13N1W-0011-R10b-SM-5MR4H 1028.4
GTEX-13SLX-0011-R10a-SM-5P9HV 1020.1
GTEX-13CZV-0011-R10b-SM-5LZYD 1001.2
GTEX-QVJO-0011-R10A-SM-2S1QJ 1000.5
GTEX-13X6I-0011-R10a-SM-5PNWI 998.3
GTEX-12WSF-0011-R10a-SM-5LZVH 996.9
GTEX-13X6K-0011-R10a-SM-5P9JR 993.4
GTEX-13FXS-0011-R10a-SM-5J2MA 990.3
GTEX-Q2AG-0011-R10A-SM-2HMLA 976.8
GTEX-13OW7-0011-R10a-SM-5L3H3 960.3
GTEX-YJ89-0011-R10a-SM-4SOK9 951.4
GTEX-13G51-0011-R10b-SM-5LZYF 951.2
GTEX-13FLW-0011-R10b-SM-5LZZF 940.2
GTEX-12WSH-0011-R10a-SM-5LZUS 940.1
GTEX-12WSM-0011-R10a-SM-5DUWV 915.2
GTEX-P44H-0011-R10A-SM-2XCEK 910.0
GTEX-XLM4-0011-R10A-SM-4AT5P 909.9
GTEX-X4XX-0011-R10B-SM-46MWO 904.6
GTEX-X4EP-0011-R10B-SM-4QASJ 899.5
GTEX-ZUA1-0011-R10a-SM-51MT6 872.2
GTEX-13O3O-0011-R10a-SM-5LUA9 868.9
GTEX-13OVL-0011-R10a-SM-5L3GS 849.1
GTEX-147GR-0011-R10b-SM-5S2UM 847.2
GTEX-ZF28-0011-R10a-SM-4WWEH 831.7
GTEX-13OW6-0011-R10a-SM-5L3HE 824.7
GTEX-ZAB4-0011-R10a-SM-4SOKH 816.0
GTEX-TSE9-0011-R10A-SM-3DB7O 802.3
GTEX-Z93S-0011-R10a-SM-4RGNM 789.4
GTEX-NPJ7-0011-R10A-SM-2I3E5 786.4
GTEX-13QJC-0011-R10a-SM-5SI63 785.6
GTEX-12126-0011-R10b-SM-5BC6T 777.9
GTEX-ZDXO-0011-R10a-SM-4WWD8 770.2
GTEX-N7MT-0011-R10A-SM-2I3E1 768.5
GTEX-ZVT3-0011-R10b-SM-57WB6 747.3
GTEX-NPJ8-0011-R10A-SM-2YUMO 731.6
GTEX-14BIL-0011-R10a-SM-5SI75 717.4
GTEX-13NYS-0011-R10a-SM-5MR4S 702.1
GTEX-13OW8-0011-R10a-SM-5L3H6 658.5
GTEX-13FLV-0011-R10b-SM-5LZZ2 637.3
GTEX-147F4-0011-R10b-SM-5S2WC 626.1
GTEX-OXRN-0011-R10A-SM-2I5GC 625.9
GTEX-145LU-0011-R10a-SM-5PNWJ 608.4
GTEX-13FTZ-0011-R10b-SM-5KLZS 549.1
GTEX-11WQK-0011-R10a-SM-5BC6R 547.8
GTEX-139TS-0011-R10a-SM-5K7TU 547.4
GTEX-11ZUS-0011-R10b-SM-5BC79 543.5
GTEX-13JUV-0011-R10b-SM-5LZXR 534.6
GTEX-RVPU-0011-R10A-SM-2XCAH 491.9
GTEX-13SLW-0011-R10a-SM-5S2UI 483.4
GTEX-ZXG5-0011-R10a-SM-57WDD 452.0
GTEX-X261-0011-R10B-SM-4E3JT 441.8
GTEX-12ZZW-0011-R10b-SM-5HL9X 432.1
GTEX-12WSD-0011-R10b-SM-5GU79 412.0
GTEX-13N2G-0011-R10a-SM-5MR34 405.8
GTEX-11WQC-0011-R10a-SM-57WCT 398.6
GTEX-NL4W-0011-R10A-SM-2I3DY 362.5
GTEX-13OVJ-0011-R10b-SM-5L3HT 349.0
GTEX-13NZA-0011-R10b-SM-5KM54 341.4
GTEX-XMD1-0011-R10A-SM-4AT4A 251.6
GTEX-OXRO-0011-R10A-SM-2I5EH 249.4
GTEX-11GSP-0011-R10a-SM-5NQ7J 239.4
GTEX-12WSA-0011-R10b-SM-5P9ET 234.1
GTEX-ZE7O-0011-R10a-SM-57WAZ 205.9
GTEX-14753-0011-R10b-SM-5S2WE 203.7
GTEX-13JVG-0011-R10b-SM-5KM2P 201.1
GTEX-1477Z-0011-R10b-SM-5S2RF 180.4
GTEX-13IVO-0011-R10a-SM-5LZY3 176.4
GTEX-131XW-0011-R10a-SM-5DUVA 106.9
GTEX-ZV68-0011-R10a-SM-51MT7 103.3
GTEX-1445S-0011-R10a-SM-5PNWB 82.2
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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