We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SYT4
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:11.9RPKM
FANTOM5:104.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA010574

 

Glial cells

Not detected  

Neuronal cells

Low  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

11.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 11.9
Samples: 117

Max RPKM: 72.4
Min RPKM: 0.4
Std RPKM: 9.8
Median RPKM: 10.2
GTEX-T2IS-0011-R5A-SM-32QP4 72.4
GTEX-131YS-0011-R5b-SM-5K7YB 34.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 34.0
GTEX-T6MN-0011-R5A-SM-32QPD 32.9
GTEX-12WSC-0011-R5b-SM-5CVNS 27.8
GTEX-P44H-0011-R5A-SM-2XCEX 27.6
GTEX-13G51-0011-R5a-SM-5L3EB 27.3
GTEX-1313W-0011-R5b-SM-5L3EP 26.9
GTEX-PVOW-0011-R5A-SM-32PL7 26.7
GTEX-13X6J-0011-R5b-SM-5PNWT 25.2
GTEX-UTHO-0011-R5A-SM-3GIJD 25.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 25.0
GTEX-S7SE-0011-R5A-SM-2XCDA 22.9
GTEX-13O3O-0011-R5b-SM-5KM44 22.4
GTEX-139TT-0011-R5b-SM-5K7W8 21.1
GTEX-145MH-0011-R5a-SM-5P9JT 20.5
GTEX-145LS-0011-R5a-SM-5SI65 20.0
GTEX-TSE9-0011-R5A-SM-3DB7J 19.9
GTEX-1399T-0011-R5b-SM-5IJDK 19.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 19.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 19.5
GTEX-WL46-0011-R5A-SM-3LK6V 19.3
GTEX-QVJO-0011-R5A-SM-2S1QM 18.8
GTEX-11OF3-0011-R5a-SM-57WB4 18.4
GTEX-13SLX-0011-R5a-SM-5O9BV 18.4
GTEX-WZTO-0011-R5B-SM-3NMC5 18.4
GTEX-WVLH-0011-R5A-SM-3MJFW 18.3
GTEX-ZUA1-0011-R5b-SM-51MTG 18.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 17.6
GTEX-13VXU-0011-R5a-SM-5O9D7 16.9
GTEX-X585-0011-R5A-SM-46MVI 16.6
GTEX-N7MS-0011-R5a-SM-2HMK8 15.9
GTEX-Z93S-0011-R5b-SM-4RGNI 15.8
GTEX-11H98-0011-R5b-SM-57WCF 15.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 15.2
GTEX-13S7M-0011-R5b-SM-5P9HS 14.7
GTEX-14ABY-0011-R5b-SM-5SI7B 14.7
GTEX-RU72-0011-R5A-SM-2TF6U 14.6
GTEX-11GSP-0011-R5a-SM-57WBE 14.4
GTEX-13OW6-0011-R5a-SM-5O9BK 14.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 14.1
GTEX-T5JC-0011-R5A-SM-32PLK 14.1
GTEX-14BIM-0011-R5b-SM-5S2RM 13.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 13.7
GTEX-13FXS-0011-R5b-SM-5LZYE 13.4
GTEX-N7MT-0011-R5a-SM-2I3G6 13.2
GTEX-WWYW-0011-R5A-SM-3NB3E 12.9
GTEX-12WSF-0011-R5a-SM-5HL8K 12.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 12.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 12.3
GTEX-13FLW-0011-R5a-SM-5LZX6 11.8
GTEX-R55E-0011-R5A-SM-2TC5N 11.6
GTEX-11NV4-0011-R5a-SM-5NQ88 11.5
GTEX-13OVL-0011-R5b-SM-5L3FU 11.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 11.5
GTEX-13X6K-0011-R5b-SM-5PNUE 11.2
GTEX-13OW7-0011-R5b-SM-5O9DM 10.7
GTEX-12WSD-0011-R5b-SM-5CVNG 10.5
GTEX-13JUV-0011-R5a-SM-5LZY5 10.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 10.1
GTEX-132Q8-0011-R5a-SM-5IJDM 9.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 8.9
GTEX-13CZV-0011-R5a-SM-5K7XA 8.6
GTEX-RVPU-0011-R5A-SM-2XCAD 8.6
GTEX-NL4W-0011-R5a-SM-2I3GD 8.3
GTEX-13NYB-0011-R5a-SM-5MR45 7.9
GTEX-13X6I-0011-R5a-SM-5PNWW 7.9
GTEX-ZE7O-0011-R5a-SM-57WBO 7.7
GTEX-QMR6-0011-R5A-SM-32PKT 7.6
GTEX-OHPN-0011-R5A-SM-2I5FF 7.4
GTEX-12ZZX-0011-R5a-SM-5HL89 6.9
GTEX-13FLV-0011-R5a-SM-5LZWT 6.9
GTEX-XMD1-0011-R5A-SM-4AT47 6.9
GTEX-12WSB-0011-R5b-SM-5GU67 6.8
GTEX-13NYS-0011-R5a-SM-5MR4D 6.7
GTEX-13OVH-0011-R5b-SM-5KM4L 6.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 6.7
GTEX-13OW5-0011-R5b-SM-5L3FR 6.5
GTEX-RVPV-0011-R5A-SM-2TF69 6.5
GTEX-XOTO-0011-R5A-SM-4B657 6.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 6.0
GTEX-14BIN-0011-R5b-SM-5SI78 5.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 5.5
GTEX-ZXG5-0011-R5b-SM-57WBN 5.5
GTEX-12WSH-0011-R5b-SM-5P9F3 5.4
GTEX-NL3H-0011-R5a-SM-2I3GB 5.4
GTEX-OXRN-0011-R5A-SM-2I5EF 5.4
GTEX-YFC4-0011-R5a-SM-4RGLR 5.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 5.3
GTEX-13CIG-0011-R5b-SM-5L3F2 4.7
GTEX-13JVG-0011-R5a-SM-5MR4O 4.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 4.2
GTEX-YJ89-0011-R5a-SM-4V6GM 4.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 3.9
GTEX-11WQC-0011-R5a-SM-5BC74 3.7
GTEX-12WSA-0011-R5b-SM-5GU5I 3.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 3.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 3.1
GTEX-144GO-0011-R5a-SM-5PNUR 3.1
GTEX-139TS-0011-R5b-SM-5J2MZ 2.4
GTEX-X4XX-0011-R5A-SM-46MWN 2.4
GTEX-ZV68-0011-R5a-SM-4YCDW 2.4
GTEX-13112-0011-R5b-SM-5DUV8 2.1
GTEX-NPJ7-0011-R5a-SM-33HBK 2.1
GTEX-ZVT3-0011-R5a-SM-51MSI 2.1
GTEX-X261-0011-R5A-SM-3NMB4 2.0
GTEX-144GL-0011-R5b-SM-5PNUJ 1.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 1.4
GTEX-13FHP-0011-R5b-SM-5LZY2 1.1
GTEX-1445S-0011-R5a-SM-5PNUS 1.1
GTEX-13CF2-0011-R5a-SM-5LZWS 1.0
GTEX-1477Z-0011-R5b-SM-5PNUO 1.0
GTEX-S7PM-0011-R5A-SM-3NM8G 0.9
GTEX-145MG-0011-R5b-SM-5S2VU 0.7
GTEX-13NZA-0011-R5b-SM-5KM4K 0.6
GTEX-139T8-0011-R5b-SM-5J1MO 0.5
GTEX-11UD1-0011-R5b-SM-5P9FP 0.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

104.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 104.6
FF:10379-105H1 89 years, female 114.6
FF:10164-103B2 76 years, female 94.7

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.