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RNF17

GENERAL INFORMATION

Gene name

 RNF17

Gene description

 Ring finger protein 17

Protein class

 Predicted intracellular proteins

Predicted localization

 Intracellular

Number of transcripts

 4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Tissue enriched (testis)
GTEx:Tissue enriched (testis)
FANTOM5:Tissue enriched (testis)

Protein evidence

 Evidence at protein level

Protein expression

 General cytoplasmic expression of varying intensity, including testis.

DATA RELIABILITY

Data reliability
description

 Antibody staining mainly not consistent with RNA expression data. Presumed off target binding observed and disregarded.

Reliability score

 Approved based on 2 antibodies.
HPA039699 , HPA040111
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RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Gallbladder

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (testis)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (testis)
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (testis)

GENE INFORMATION

Gene name

 RNF17 (HGNC Symbol)

Synonyms

 FLJ11045, Mmip-2, SPATA23, TDRD4

Description

 Ring finger protein 17 (HGNC Symbol)

Entrez gene summary

 This gene is similar to a mouse gene that encodes a testis-specific protein containing a RING finger domain. Alternatively spliced transcript variants encoding different isoforms have been found. [provided by RefSeq, May 2010]

Chromosome

 13

Cytoband

 q12.12

Chromosome location (bp)

 24764152 - 24879921

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000132972 (version 83.38)

Entrez gene

 56163

UniProt

 Q9BXT8 (UniProt - Evidence at protein level)

neXtProt

 NX_Q9BXT8

Antibodypedia

 RNF17 antibodies

PROTEIN BROWSER
RNF17-001
RNF17-002
RNF17-003
RNF17-004

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
RNF17-001
ENSP00000388892
ENST00000418120
Q5T2J8 [Direct mapping]
RING finger protein 17
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Predicted intracellular proteins
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 855 aa
97.7 kDa 		No 0
RNF17-002
ENSP00000344776
ENST00000339524
Q5T6R1 [Direct mapping]
RING finger protein 17
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Predicted intracellular proteins
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 633 aa
71.8 kDa 		No 0
RNF17-003
ENSP00000255324
ENST00000255324
Q9BXT8 [Direct mapping]
RING finger protein 17
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Predicted intracellular proteins
Protein evidence (Kim et al 2014)
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GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0007275 [multicellular organismal development]
GO:0007286 [spermatid development]
GO:0008270 [zinc ion binding]
GO:0042803 [protein homodimerization activity]
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 1623 aa
184.6 kDa 		No 0
RNF17-004
ENSP00000255325
ENST00000255325
Q9BXT8 [Direct mapping]
RING finger protein 17
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Predicted intracellular proteins
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GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0007275 [multicellular organismal development]
GO:0008270 [zinc ion binding]
Show all
 653 aa
73.7 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.