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Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA044658

 

Antibody CAB002505

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Novocastra
 

Product name

HPA044658   NCL-CD72  

Host species

Rabbit   Mouse  

Clonality

pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Not known  

Other gene match

   

Released in version

13   1  

References

   

VALIDATION SUMMARY

 
 

Antibody HPA044658

 

Antibody CAB002505

 
Immunocytochemistry

Approved    
Immunohistochemistry

Supported  

Validated
 
Western blot

Uncertain   Uncertain  
Protein array

Supported    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA044658

 

Antibody CAB002505

 

Standard validation

Approved    

   

Figure description

Immunofluorescent staining of human cell line SH-SY5Y shows localization to nucleus & mitochondria.    

Antibody dilution

1:70    

Literature conformity

The subcellular location is partly supported by literature or no literature is available.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA044658

 

Antibody CAB002505

 

Formal validation: Orthogonal

 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 

 
 

 

 

Figure description

  Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.  
 

Standard validation

Supported   Supported  

   

Figure description

Immunohistochemical staining of human lymph node shows moderate cytoplasmic positivity in germinal center cells and non-germinal center cells.   Immunohistochemical staining of human spleen shows strong cytoplasmic positivity in cells in red pulp  

Expression

RNA: detected in 30 tissues
Protein: detected in 11 cell types
  RNA: detected in 30 tissues
Protein: detected in 7 cell types
 

Retrieval

HIER pH6   HIER pH9  

Antibody dilution

1:550   1:50  

Literature conformity

Partly consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA044658

 

Antibody CAB002505

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
Single band differing more than +/-20% from predicted size in kDa and not supported by experimental and/or bioinformatic data.
  Uncertain

Analysis performed using a standard panel of samples.
No bands detected.
 

   

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

40.2, 40.1   40.2, 40.1, 12.5, 12.2  

Antibody dilution

1:250   1:500  

PROTEIN ARRAY

 
 

Antibody HPA044658

 

Antibody CAB002505

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:3000    

ANTIGEN INFORMATION

 
 

Antibody HPA044658

 

Antibody CAB002505

 

Antigen

Recombinant protein fragment   Not known  

Length (aa)

147    

Antigen sequence

AQSQEALQVEQRAHQAAEGQLQACQADRQKTKETLQSEEQQRRALEQKLS
NMENRLKPFFTCGSADTCCPSGWIMHQKSCFYISLTSKNWQESQKQCETL
SSKLATFSEIYPQSHSYYFLNSLLPNGGSGNSYWTGLSSNKDWKLTD
   

Matching transcripts

CD72-001 - ENSP00000379980 [100%]
CD72-201 - ENSP00000259633 [100%]
CD72-202 - ENSP00000483742 [100%]
   

Other gene match

   
ANTIGEN VIEW
CD72-001
CD72-201
CD72-202
 

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