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MAP1LC3B

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:35.2TPM
GTEx:28.9RPKM
FANTOM5:64.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not available
 
 

Antibody staining

Antibody HPA052474

  

Antibody HPA052484

  

Antibody HPA053767

  

Antibody CAB037216

  

Endothelial cells

 Not detected   Not detected   High   Not detected  

Glandular cells

 Not detected   Low   High   Not detected  

Peripheral nerve/ganglion

 Not detected   Not detected   High  
          
       
       
       

COLON - HPA RNA-seq

Average TPM

35.2
overview Male, age 54
Sample 1
TPM: 43.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 34.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 28.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 39.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 28.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 35.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 33.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 30.0
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 36.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 31.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 41.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 38.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 34.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

28.9

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 30.2
Samples: 149

Max RPKM: 91.7
Min RPKM: 17.4
Std RPKM: 8.5
Median RPKM: 28.5
GTEX-13X6I-2726-SM-5Q5ET 91.7
GTEX-11WQK-2526-SM-5CVL8 63.8
GTEX-148VJ-2426-SM-5NQ9Y 49.7
GTEX-ZTSS-1226-SM-51MSZ 48.5
GTEX-Y9LG-1326-SM-4VBQB 43.8
GTEX-12696-1926-SM-5EGJT 43.2
GTEX-13SLW-2826-SM-5Q5ES 42.7
GTEX-ZLV1-1326-SM-4WWER 42.2
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 27.8
Samples: 196

Max RPKM: 171.8
Min RPKM: 15.3
Std RPKM: 13.5
Median RPKM: 25.1
GTEX-14C38-2626-SM-5RQI4 171.8
GTEX-ZXES-1626-SM-5NQ7L 68.5
GTEX-13OVG-1426-SM-5K7VP 67.7
GTEX-117YW-1826-SM-5PNY5 66.5
GTEX-WEY5-1426-SM-4LMJ3 57.6
GTEX-148VJ-2626-SM-5QGPI 53.0
GTEX-ZYVF-2826-SM-5GIDK 52.0
GTEX-11WQK-2126-SM-5EQME 51.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

64.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 64.1
FF:10014-101C5 62,83,84 years, mixed 64.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.