We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
MED9
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

RNA expression

GTEx:11.3RPKM
FANTOM5:57.9Tags Per Million

CAUDATE - Annotated protein expression

 

Antibody staining

Antibody HPA056415

 

Glial cells

Not detected  

Neuronal cells

Low  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

11.3

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 11.3
Samples: 117

Max RPKM: 20.4
Min RPKM: 4.2
Std RPKM: 3.3
Median RPKM: 11.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 20.4
GTEX-132Q8-0011-R5a-SM-5IJDM 19.5
GTEX-T5JC-0011-R5A-SM-32PLK 18.6
GTEX-13G51-0011-R5a-SM-5L3EB 18.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 17.8
GTEX-14BIM-0011-R5b-SM-5S2RM 17.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 17.3
GTEX-11H98-0011-R5b-SM-57WCF 16.7
GTEX-N7MT-0011-R5a-SM-2I3G6 16.6
GTEX-13CZV-0011-R5a-SM-5K7XA 16.4
GTEX-13X6K-0011-R5b-SM-5PNUE 15.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 15.7
GTEX-1399T-0011-R5b-SM-5IJDK 15.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 15.1
GTEX-ZUA1-0011-R5b-SM-51MTG 15.0
GTEX-T6MN-0011-R5A-SM-32QPD 14.9
GTEX-131YS-0011-R5b-SM-5K7YB 14.8
GTEX-RU72-0011-R5A-SM-2TF6U 14.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 14.7
GTEX-12WSC-0011-R5b-SM-5CVNS 14.4
GTEX-13X6I-0011-R5a-SM-5PNWW 14.3
GTEX-12WSF-0011-R5a-SM-5HL8K 14.1
GTEX-QVJO-0011-R5A-SM-2S1QM 14.1
GTEX-P44H-0011-R5A-SM-2XCEX 13.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 13.9
GTEX-13JUV-0011-R5a-SM-5LZY5 13.6
GTEX-X585-0011-R5A-SM-46MVI 13.3
GTEX-14ABY-0011-R5b-SM-5SI7B 13.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 12.9
GTEX-13OW5-0011-R5b-SM-5L3FR 12.9
GTEX-11OF3-0011-R5a-SM-57WB4 12.8
GTEX-12WSB-0011-R5b-SM-5GU67 12.7
GTEX-13VXU-0011-R5a-SM-5O9D7 12.7
GTEX-145LS-0011-R5a-SM-5SI65 12.7
GTEX-RVPU-0011-R5A-SM-2XCAD 12.7
GTEX-UTHO-0011-R5A-SM-3GIJD 12.5
GTEX-13S7M-0011-R5b-SM-5P9HS 12.4
GTEX-WZTO-0011-R5B-SM-3NMC5 12.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 12.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 12.2
GTEX-145MH-0011-R5a-SM-5P9JT 12.1
GTEX-S7SE-0011-R5A-SM-2XCDA 12.1
GTEX-WVLH-0011-R5A-SM-3MJFW 12.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 12.0
GTEX-13SLX-0011-R5a-SM-5O9BV 12.0
GTEX-Z93S-0011-R5b-SM-4RGNI 12.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 12.0
GTEX-1313W-0011-R5b-SM-5L3EP 11.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 11.9
GTEX-XMD1-0011-R5A-SM-4AT47 11.9
GTEX-11GSP-0011-R5a-SM-57WBE 11.8
GTEX-13OVH-0011-R5b-SM-5KM4L 11.8
GTEX-TSE9-0011-R5A-SM-3DB7J 11.8
GTEX-139TT-0011-R5b-SM-5K7W8 11.7
GTEX-11NV4-0011-R5a-SM-5NQ88 11.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 11.6
GTEX-13FXS-0011-R5b-SM-5LZYE 11.6
GTEX-13NYS-0011-R5a-SM-5MR4D 11.6
GTEX-13X6J-0011-R5b-SM-5PNWT 11.6
GTEX-13OW6-0011-R5a-SM-5O9BK 11.5
GTEX-T2IS-0011-R5A-SM-32QP4 11.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 11.2
GTEX-OHPN-0011-R5A-SM-2I5FF 11.0
GTEX-13O3O-0011-R5b-SM-5KM44 10.9
GTEX-N7MS-0011-R5a-SM-2HMK8 10.9
GTEX-13NYB-0011-R5a-SM-5MR45 10.8
GTEX-13OVL-0011-R5b-SM-5L3FU 10.8
GTEX-WWYW-0011-R5A-SM-3NB3E 10.8
GTEX-ZE7O-0011-R5a-SM-57WBO 10.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 10.6
GTEX-NPJ7-0011-R5a-SM-33HBK 10.4
GTEX-RVPV-0011-R5A-SM-2TF69 10.4
GTEX-13JVG-0011-R5a-SM-5MR4O 10.3
GTEX-1445S-0011-R5a-SM-5PNUS 10.2
GTEX-13FLW-0011-R5a-SM-5LZX6 10.1
GTEX-13CIG-0011-R5b-SM-5L3F2 9.9
GTEX-13OW7-0011-R5b-SM-5O9DM 9.9
GTEX-R55E-0011-R5A-SM-2TC5N 9.9
GTEX-ZXG5-0011-R5b-SM-57WBN 9.9
GTEX-13FLV-0011-R5a-SM-5LZWT 9.7
GTEX-WL46-0011-R5A-SM-3LK6V 9.7
GTEX-144GO-0011-R5a-SM-5PNUR 9.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 9.6
GTEX-139T8-0011-R5b-SM-5J1MO 9.5
GTEX-PVOW-0011-R5A-SM-32PL7 9.3
GTEX-12WSA-0011-R5b-SM-5GU5I 9.0
GTEX-12WSD-0011-R5b-SM-5CVNG 9.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 8.9
GTEX-X261-0011-R5A-SM-3NMB4 8.9
GTEX-YFC4-0011-R5a-SM-4RGLR 8.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 8.6
GTEX-QMR6-0011-R5A-SM-32PKT 8.6
GTEX-NL4W-0011-R5a-SM-2I3GD 8.5
GTEX-12ZZX-0011-R5a-SM-5HL89 8.3
GTEX-ZV68-0011-R5a-SM-4YCDW 8.3
GTEX-ZVT3-0011-R5a-SM-51MSI 8.2
GTEX-139TS-0011-R5b-SM-5J2MZ 8.1
GTEX-14BIN-0011-R5b-SM-5SI78 8.1
GTEX-XOTO-0011-R5A-SM-4B657 8.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 8.0
GTEX-11WQC-0011-R5a-SM-5BC74 7.5
GTEX-X4XX-0011-R5A-SM-46MWN 7.5
GTEX-OXRN-0011-R5A-SM-2I5EF 7.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 6.8
GTEX-144GL-0011-R5b-SM-5PNUJ 6.6
GTEX-S7PM-0011-R5A-SM-3NM8G 6.6
GTEX-13112-0011-R5b-SM-5DUV8 6.4
GTEX-YJ89-0011-R5a-SM-4V6GM 6.3
GTEX-11UD1-0011-R5b-SM-5P9FP 6.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 6.1
GTEX-1477Z-0011-R5b-SM-5PNUO 6.1
GTEX-NL3H-0011-R5a-SM-2I3GB 5.9
GTEX-12WSH-0011-R5b-SM-5P9F3 5.6
GTEX-13CF2-0011-R5a-SM-5LZWS 5.6
GTEX-13FHP-0011-R5b-SM-5LZY2 5.4
GTEX-13NZA-0011-R5b-SM-5KM4K 4.7
GTEX-145MG-0011-R5b-SM-5S2VU 4.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

57.9

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 57.9
FF:10379-105H1 89 years, female 69.5
FF:10164-103B2 76 years, female 46.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.