We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
AFG3L2
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:35.0TPM
GTEx:15.2RPKM
FANTOM5:56.1Tags Per Million

BREAST - Annotated protein expression

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:Low
Myoepithelial cells:Not detected
 

Antibody staining

Antibody HPA004479

 

Antibody HPA004480

 

Adipocytes

Low   Not detected  

Glandular cells

Medium   Low  

Myoepithelial cells

Medium   Not detected  
   
   
   

BREAST - HPA RNA-seq

Average TPM

35.0

overview Female, age 52
Sample 1
TPM: 33.0
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80
Sample 2
TPM: 25.0
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47
Sample 3
TPM: 36.1
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38
Sample 4
TPM: 45.7
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seq

Average RPKM

15.2

GTEx sample id

RPKM

 

Breast - Mammary Tissue

Breast - Mammary Tissue
RPKM: 15.2
Samples: 214

Max RPKM: 26.1
Min RPKM: 9.3
Std RPKM: 2.8
Median RPKM: 15.2
GTEX-11P82-1326-SM-5HL62 26.1
GTEX-11TUW-1826-SM-5BC5D 22.9
GTEX-1399U-1826-SM-5PNZ1 22.4
GTEX-1211K-1926-SM-5EQLB 21.9
GTEX-T2IS-1526-SM-32QPR 21.7
GTEX-117YX-1426-SM-5H12H 20.7
GTEX-WY7C-2726-SM-3NB3P 20.6
GTEX-11TT1-2126-SM-5GU5Y 20.5
GTEX-ZDXO-0126-SM-5S2ND 20.5
GTEX-ZVT2-1826-SM-5NQ8W 20.5
GTEX-ZY6K-1626-SM-5GZWV 20.4
GTEX-YB5K-1626-SM-5IFIN 20.3
GTEX-XOT4-0726-SM-4GIAW 19.9
GTEX-ZF29-1926-SM-5S2P1 19.8
GTEX-12WSK-2226-SM-5GCO5 18.9
GTEX-VJWN-0726-SM-3GIJ8 18.8
GTEX-ZXES-0826-SM-5E43C 18.8
GTEX-11EM3-1326-SM-5N9C6 18.7
GTEX-131XW-0726-SM-5EGK3 18.7
GTEX-11P7K-0726-SM-5EGKX 18.6
GTEX-11WQC-1726-SM-5GU4W 18.6
GTEX-13O3O-0826-SM-5K7WE 18.6
GTEX-144GM-0926-SM-5O994 18.6
GTEX-T5JW-2026-SM-4DM63 18.6
GTEX-WXYG-2226-SM-4E3IM 18.5
GTEX-XGQ4-0926-SM-4AT4U 18.5
GTEX-13113-1726-SM-5GCOO 18.2
GTEX-ZA64-1526-SM-5CVMD 18.2
GTEX-ZC5H-2626-SM-5J2MG 18.2
GTEX-T6MN-0726-SM-32PML 18.1
GTEX-ZV7C-1826-SM-5NQ83 18.1
GTEX-13CF3-2126-SM-5IFJP 18.0
GTEX-QEL4-2126-SM-447AE 18.0
GTEX-ZZPU-0626-SM-5E43T 18.0
GTEX-14E6E-1326-SM-5S2NR 17.9
GTEX-R55F-1726-SM-2TF4R 17.8
GTEX-XBED-1626-SM-47JYN 17.8
GTEX-ZDYS-1126-SM-5K7UB 17.8
GTEX-13PVQ-1026-SM-5KM3M 17.7
GTEX-ZF2S-2026-SM-5E461 17.7
GTEX-ZLFU-2126-SM-4WWEV 17.7
GTEX-ZYWO-2326-SM-5GZY4 17.7
GTEX-13O61-1826-SM-5KM4I 17.6
GTEX-TMMY-0726-SM-33HBE 17.6
GTEX-X4XY-0926-SM-4E3JD 17.6
GTEX-13FHO-0826-SM-5L3E8 17.5
GTEX-13W3W-1226-SM-5LU4H 17.4
GTEX-Y114-2026-SM-4TT7L 17.4
GTEX-SE5C-2126-SM-4BRUJ 17.3
GTEX-Y3IK-2326-SM-4WWDT 17.3
GTEX-X261-0626-SM-3NMD9 17.2
GTEX-ZPIC-1126-SM-5BC7F 17.2
GTEX-ZTTD-1026-SM-51MRD 17.2
GTEX-11I78-2226-SM-5PNYA 17.1
GTEX-11ZTT-2326-SM-5EQLG 17.1
GTEX-12BJ1-1826-SM-5HL9N 17.1
GTEX-ZQG8-0726-SM-5P9H9 17.1
GTEX-U3ZH-1426-SM-4DXSR 17.0
GTEX-133LE-1726-SM-5K7VQ 16.9
GTEX-14AS3-1626-SM-5S2OY 16.8
GTEX-REY6-2426-SM-48FF5 16.8
GTEX-131YS-0626-SM-5EGKL 16.7
GTEX-13FTX-1126-SM-5N9EN 16.7
GTEX-QEG5-0726-SM-4R1JQ 16.7
GTEX-T6MO-0326-SM-32QOK 16.7
GTEX-W5X1-2326-SM-3GIL6 16.7
GTEX-13OW5-2226-SM-5L3HC 16.6
GTEX-13FTW-1426-SM-5LZWZ 16.5
GTEX-145ME-1526-SM-5Q5F2 16.5
GTEX-X4EP-2926-SM-3P5YQ 16.4
GTEX-ZV6S-1826-SM-5NQ8D 16.4
GTEX-XUJ4-1926-SM-4BOOV 16.3
GTEX-ZYW4-0826-SM-5GIDG 16.3
GTEX-ZZ64-1226-SM-5E43R 16.3
GTEX-Y5V6-2126-SM-4WWFX 16.2
GTEX-Y8LW-1626-SM-5IFHX 16.2
GTEX-ZTX8-1226-SM-4YCE9 16.2
GTEX-ZVT4-1026-SM-57WC4 16.2
GTEX-1122O-1226-SM-5H113 16.1
GTEX-11PRG-0826-SM-5EQ6A 16.1
GTEX-TML8-1226-SM-32QON 16.1
GTEX-ZQUD-1926-SM-51MSA 16.1
GTEX-11GS4-2126-SM-5A5KR 16.0
GTEX-QDT8-0626-SM-48TYW 16.0
GTEX-S4P3-1326-SM-4AD6V 16.0
GTEX-U412-1826-SM-4DXTJ 16.0
GTEX-XUZC-1626-SM-4BRVP 16.0
GTEX-ZVE2-1226-SM-5NQ8R 16.0
GTEX-TKQ1-0226-SM-33HB5 15.9
GTEX-WYVS-1726-SM-3NMAY 15.9
GTEX-ZAJG-0626-SM-5HL8X 15.9
GTEX-111YS-1926-SM-5GICC 15.8
GTEX-SIU7-1626-SM-4BRUK 15.8
GTEX-VUSG-2226-SM-4KKZO 15.8
GTEX-11P81-1926-SM-5BC53 15.6
GTEX-147F4-2826-SM-5NQBN 15.6
GTEX-WYJK-1326-SM-3NB2T 15.5
GTEX-1314G-1226-SM-5BC6D 15.4
GTEX-QMRM-1626-SM-4R1KV 15.4
GTEX-ZLV1-1426-SM-4WWES 15.4
GTEX-11DXZ-1926-SM-5GZZL 15.3
GTEX-S4UY-0726-SM-4AD6X 15.3
GTEX-ZDTT-2126-SM-5S2OJ 15.3
GTEX-ZT9W-2026-SM-51MRA 15.3
GTEX-12ZZX-1126-SM-5EGKB 15.2
GTEX-139T6-1626-SM-5PNYZ 15.2
GTEX-WI4N-1426-SM-3LK7H 15.2
GTEX-ZU9S-1926-SM-5NQBP 15.2
GTEX-145LT-0726-SM-5S2VM 15.1
GTEX-RWS6-1926-SM-47JXY 15.1
GTEX-WFON-1826-SM-3GILG 15.1
GTEX-Y5V5-2126-SM-4WWFO 15.1
GTEX-TKQ2-1826-SM-33HB2 15.0
GTEX-13NZ8-0126-SM-5IJCT 14.9
GTEX-13NZB-2126-SM-5MR4Y 14.9
GTEX-UJHI-1426-SM-3DB9C 14.9
GTEX-RUSQ-2026-SM-4GIAK 14.8
GTEX-Y5LM-1726-SM-4VDSX 14.8
GTEX-146FH-0826-SM-5SI8T 14.7
GTEX-WYBS-0926-SM-3NM94 14.7
GTEX-11EQ9-1826-SM-5Q5AJ 14.6
GTEX-13D11-1026-SM-5IJFB 14.6
GTEX-145MO-0826-SM-5NQBL 14.6
GTEX-S341-1526-SM-4AD6K 14.6
GTEX-11EMC-2026-SM-5A5JV 14.5
GTEX-R3RS-0626-SM-48FE1 14.5
GTEX-Y9LG-1426-SM-5IFJZ 14.5
GTEX-ZEX8-2226-SM-57WC6 14.5
GTEX-12WSN-1326-SM-5GCNT 14.4
GTEX-13QIC-2326-SM-5LU5N 14.4
GTEX-S4Q7-1126-SM-4AD6R 14.4
GTEX-UTHO-1026-SM-3GAF7 14.4
GTEX-YEC3-1026-SM-5IFI5 14.4
GTEX-R53T-1526-SM-48FEK 14.3
GTEX-R55D-0826-SM-48FEA 14.3
GTEX-11DZ1-0326-SM-5N9BN 14.2
GTEX-1269C-2426-SM-5FQSN 14.2
GTEX-XUW1-2326-SM-4BOO5 14.2
GTEX-12WSM-1726-SM-5BC6J 14.1
GTEX-XV7Q-2326-SM-4BRVZ 14.1
GTEX-ZAB4-2526-SM-5HL8M 14.1
GTEX-ZVTK-0326-SM-51MRR 14.1
GTEX-13CF2-2026-SM-5K7VI 14.0
GTEX-Y8E4-1626-SM-5S2MW 14.0
GTEX-1117F-2826-SM-5GZXL 13.9
GTEX-1192X-2326-SM-5987X 13.8
GTEX-11WQK-2426-SM-5GU5C 13.8
GTEX-T5JC-2126-SM-32PMO 13.6
GTEX-U3ZN-1926-SM-4DXSG 13.6
GTEX-ZF3C-2326-SM-5S2MZ 13.6
GTEX-12KS4-0126-SM-5Q5A5 13.5
GTEX-139TU-0626-SM-5KM3X 13.5
GTEX-YB5E-1726-SM-5IFJ3 13.5
GTEX-13FTY-2226-SM-5J1ND 13.4
GTEX-ZVZQ-0826-SM-51MRF 13.4
GTEX-145MN-1926-SM-5SIAI 13.3
GTEX-YFCO-1826-SM-4W1YH 13.3
GTEX-ZYFC-0826-SM-5E44K 13.3
GTEX-11DXW-0626-SM-5N9ER 13.2
GTEX-1313W-0826-SM-5EQ4T 13.2
GTEX-WRHU-0326-SM-3MJFY 13.2
GTEX-13PL6-2926-SM-5L3I2 13.1
GTEX-RU72-0626-SM-46MUI 13.1
GTEX-11GSO-1926-SM-5A5K3 13.0
GTEX-X15G-1626-SM-3NMB3 13.0
GTEX-XQ3S-1326-SM-4BOPQ 13.0
GTEX-11ONC-2126-SM-5HL6E 12.9
GTEX-13N1W-0626-SM-5MR4U 12.9
GTEX-13OW8-0226-SM-5K7UP 12.9
GTEX-WOFL-0826-SM-3MJG1 12.9
GTEX-13NZ9-1026-SM-5MR5K 12.8
GTEX-132Q8-1426-SM-5EGK7 12.7
GTEX-14ABY-2126-SM-5QGQZ 12.7
GTEX-11DXY-2326-SM-5GICW 12.6
GTEX-139T8-0826-SM-5L3DE 12.6
GTEX-13N11-1726-SM-5J1OJ 12.6
GTEX-Q2AG-0326-SM-48U1O 12.6
GTEX-ZYT6-0126-SM-5E45J 12.6
GTEX-T2YK-2226-SM-32QPT 12.5
GTEX-13S86-1226-SM-5S2OA 12.4
GTEX-S7SE-0826-SM-4AT4D 12.3
GTEX-UPK5-2326-SM-3P5Z8 12.3
GTEX-117XS-1926-SM-5GICO 12.2
GTEX-11LCK-2426-SM-5HL5F 12.1
GTEX-13O3P-0826-SM-5L3DH 12.0
GTEX-YJ8O-2226-SM-5IFHW 12.0
GTEX-11EI6-0626-SM-5985T 11.8
GTEX-12WSB-0626-SM-59HJO 11.8
GTEX-Y111-2026-SM-4SOJA 11.8
GTEX-ZUA1-1526-SM-59HLS 11.7
GTEX-144GL-2026-SM-5LU3O 11.6
GTEX-11NV4-2026-SM-5N9DG 11.5
GTEX-Y3I4-1526-SM-4TT7K 11.4
GTEX-QVJO-1826-SM-447C9 11.3
GTEX-YFC4-1426-SM-5IFJG 11.2
GTEX-PSDG-1626-SM-48TCQ 11.0
GTEX-11NSD-0926-SM-5N9DR 10.9
GTEX-S32W-2026-SM-4AD6E 10.9
GTEX-U8XE-0826-SM-4E3J1 10.9
GTEX-132AR-0826-SM-5EGK6 10.6
GTEX-13W46-0826-SM-5LU3H 10.6
GTEX-XMD2-0926-SM-4WWEF 10.6
GTEX-XMK1-1126-SM-4IHJ8 10.6
GTEX-11O72-2126-SM-5N9FO 10.3
GTEX-11ZUS-0826-SM-5FQUY 10.2
GTEX-XMD1-0826-SM-4AT52 10.1
GTEX-XYKS-1326-SM-4BRUN 10.0
GTEX-132NY-0826-SM-5K7Y7 9.9
GTEX-S33H-0326-SM-4AD6N 9.9
GTEX-11OF3-1926-SM-59889 9.8
GTEX-13O3Q-2226-SM-5KM4O 9.8
GTEX-XQ8I-2426-SM-4WAXY 9.5
GTEX-14753-2426-SM-5LU8U 9.4
GTEX-ZWKS-2826-SM-5NQ74 9.3
Show all

BREAST - FANTOM5 CAGE

Average Tags Per Million

56.1

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 56.1
FF:10080-102A8 77 years, female 56.1

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.