Cell atlas - SLC13A5 - The Human Protein Atlas

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SLC13A5

TISSUE

CELL

CANCER

CELL ATLAS RNA EXPRESSION HUMAN CELLS

GENE/PROTEIN

Antibody validation

Dictionary
	Nucleoplasm

Human cell
	Nucleoplasm

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GENERAL INFORMATION
Gene name	SLC13A5
Gene description	Solute carrier family 13 (sodium-dependent citrate transporter), member 5
Protein class	Predicted membrane proteins Transporters
Predicted localization	Membrane
Number of transcripts	6
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HUMAN PROTEIN ATLAS INFORMATION
Summary	Localized to the nucleoplasm.
RNA cell category	Cell line enriched (Hep G2)
Protein evidence	Evidence at protein level
Main location	Localized to the Nucleoplasm (uncertain)

DATA RELIABILITY
Reliability score	Uncertain based on 1 antibody. HPA057088
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ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Cell line enriched (Hep G2) Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

HUMAN CELLS

Summary

Localized to the nucleoplasm.

Main location

Nucleoplasm (uncertain)


	Toggle channels	Low High G1 S G2 M N/A

Thumbnail	Antibody	Cell line	Location	Single-cell variation	Cell cycle dependent variation
	HPA057088	Hep G2	Nucleoplasm
	HPA057088	U-2 OS	Nucleoplasm
	HPA057088	U-251 MG	Nucleoplasm

GENE INFORMATION
Gene name	SLC13A5 (HGNC Symbol)
Synonyms	NACT
Description	Solute carrier family 13 (sodium-dependent citrate transporter), member 5 (HGNC Symbol)
Entrez gene summary	This gene encodes a protein belonging to the solute carrier family 13 group of proteins. This family member is a sodium-dependent citrate cotransporter that may regulate metabolic processes. Mutations in this gene cause early infantile epileptic encephalopathy 25. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014]
Chromosome	17
Cytoband	p13.1
Chromosome location (bp)	6684713 - 6713567
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000141485 (version 83.38)
Entrez gene	284111
UniProt	Q86YT5 (UniProt - Evidence at protein level)
neXtProt	NX_Q86YT5
Antibodypedia	SLC13A5 antibodies

PROTEIN BROWSER

SLC13A5-001	SLC13A5-002	SLC13A5-003	SLC13A5-004	SLC13A5-012	SLC13A5-013

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SLC13A5-001 ENSP00000406220 ENST00000433363	Q86YT5 [Direct mapping] Solute carrier family 13 member 5 Show all	Transporters Electrochemical Potential-driven transporters Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based >9TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005215 [transporter activity] GO:0005886 [plasma membrane] GO:0005887 [integral component of plasma membrane] GO:0006814 [sodium ion transport] GO:0006842 [tricarboxylic acid transport] GO:0015137 [citrate transmembrane transporter activity] GO:0015141 [succinate transmembrane transporter activity] GO:0015142 [tricarboxylic acid transmembrane transporter activity] GO:0015744 [succinate transport] GO:0015746 [citrate transport] GO:0016020 [membrane] GO:0017153 [sodium:dicarboxylate symporter activity] GO:0035674 [tricarboxylic acid transmembrane transport] GO:0055085 [transmembrane transport] GO:0071422 [succinate transmembrane transport] Show all	568 aa 63.1 kDa	No	>9
SLC13A5-002 ENSP00000459372 ENST00000573648	Q86YT5 [Direct mapping] Solute carrier family 13 member 5 Show all	Transporters Electrochemical Potential-driven transporters Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based >9TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005215 [transporter activity] GO:0005886 [plasma membrane] GO:0005887 [integral component of plasma membrane] GO:0006814 [sodium ion transport] GO:0015137 [citrate transmembrane transporter activity] GO:0015141 [succinate transmembrane transporter activity] GO:0015746 [citrate transport] GO:0016020 [membrane] GO:0017153 [sodium:dicarboxylate symporter activity] GO:0035674 [tricarboxylic acid transmembrane transport] GO:0055085 [transmembrane transport] GO:0071422 [succinate transmembrane transport] Show all	522 aa 58.1 kDa	No	>9
SLC13A5-003 ENSP00000370464 ENST00000381074	Q86YT5 [Direct mapping] Solute carrier family 13 member 5 Show all	Transporters Electrochemical Potential-driven transporters Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based >9TM proteins predicted by MDM Show all	GO:0005215 [transporter activity] GO:0005886 [plasma membrane] GO:0005887 [integral component of plasma membrane] GO:0006814 [sodium ion transport] GO:0015137 [citrate transmembrane transporter activity] GO:0015141 [succinate transmembrane transporter activity] GO:0015746 [citrate transport] GO:0016020 [membrane] GO:0017153 [sodium:dicarboxylate symporter activity] GO:0035674 [tricarboxylic acid transmembrane transport] GO:0055085 [transmembrane transport] GO:0071422 [succinate transmembrane transport] Show all	525 aa 58.1 kDa	No	>9
SLC13A5-004 ENSP00000293800 ENST00000293800	Q86YT5 [Direct mapping] Solute carrier family 13 member 5 Show all	Transporters Electrochemical Potential-driven transporters Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based >9TM proteins predicted by MDM Show all	GO:0005215 [transporter activity] GO:0005886 [plasma membrane] GO:0005887 [integral component of plasma membrane] GO:0006814 [sodium ion transport] GO:0015137 [citrate transmembrane transporter activity] GO:0015141 [succinate transmembrane transporter activity] GO:0015746 [citrate transport] GO:0016020 [membrane] GO:0017153 [sodium:dicarboxylate symporter activity] GO:0035674 [tricarboxylic acid transmembrane transport] GO:0055085 [transmembrane transport] GO:0071422 [succinate transmembrane transport] Show all	551 aa 61.2 kDa	No	>9
SLC13A5-012 ENSP00000460037 ENST00000570687	I3L2Y7 [Direct mapping] Solute carrier family 13 member 5 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005215 [transporter activity] GO:0006814 [sodium ion transport] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0055085 [transmembrane transport] Show all	94 aa 9.9 kDa	Yes	1
SLC13A5-013 ENSP00000461622 ENST00000572352	I3L4X6 [Direct mapping] Solute carrier family 13 member 5 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0005215 [transporter activity] GO:0006814 [sodium ion transport] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0055085 [transmembrane transport] Show all	167 aa 18.4 kDa	No	2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.