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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:12.9TPM
GTEx:24.7RPKM
FANTOM5:91.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA052625

  

Antibody CAB004300

  

Antibody CAB004674

  

Endothelial cells

 Not detected   Low   Medium  

Glandular cells

 Medium   Low   Medium  

Peripheral nerve/ganglion

 Medium   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

12.9
overview Male, age 54
Sample 1
TPM: 17.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 14.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 8.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 19.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 12.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 16.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 7.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 9.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 13.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 6.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 11.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 18.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 11.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

24.7

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 33.2
Samples: 149

Max RPKM: 61
Min RPKM: 18.9
Std RPKM: 8.8
Median RPKM: 32.2
GTEX-131XG-1526-SM-5GCNQ 61.0
GTEX-139T6-1426-SM-5P9J7 56.3
GTEX-12BJ1-2026-SM-5FQUH 55.6
GTEX-13OVI-2126-SM-5KM3U 51.6
GTEX-ZLV1-1326-SM-4WWER 51.6
GTEX-1339X-1726-SM-5P9J9 49.3
GTEX-13O61-1526-SM-5KM3P 47.7
GTEX-WFG7-1626-SM-4LVMF 47.7
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 18.2
Samples: 196

Max RPKM: 54
Min RPKM: 3.4
Std RPKM: 11.6
Median RPKM: 14.6
GTEX-X5EB-0926-SM-46MVT 54.0
GTEX-ZV6S-1226-SM-59HLH 53.1
GTEX-WEY5-1426-SM-4LMJ3 47.3
GTEX-XAJ8-0426-SM-47JYJ 45.7
GTEX-S341-1426-SM-4AD6U 43.1
GTEX-12WSL-1626-SM-5GCMU 42.8
GTEX-Y114-1526-SM-4TT79 42.8
GTEX-11WQK-2126-SM-5EQME 42.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

91.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 91.5
FF:10014-101C5 62,83,84 years, mixed 91.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.