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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:18.3TPM
GTEx:12.5RPKM
FANTOM5:37.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA001759

  

Antibody CAB004318

  

Endothelial cells

 Medium   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Low   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

18.3
overview Male, age 54
Sample 1
TPM: 17.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 15.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 13.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 15.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 11.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 18.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 22.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 19.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 22.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 16.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 27.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 21.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 15.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.5

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 13.2
Samples: 149

Max RPKM: 22.7
Min RPKM: 7.5
Std RPKM: 2.1
Median RPKM: 12.9
GTEX-14E6C-2226-SM-5QGQG 22.7
GTEX-11WQK-2526-SM-5CVL8 20.0
GTEX-148VJ-2426-SM-5NQ9Y 19.3
GTEX-WFON-1326-SM-4LVMN 19.2
GTEX-131XG-1526-SM-5GCNQ 17.2
GTEX-117YX-0526-SM-5EGJH 16.8
GTEX-11P81-1426-SM-5P9JN 16.3
GTEX-Y114-1626-SM-4TT7I 16.3
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 12.0
Samples: 196

Max RPKM: 19.3
Min RPKM: 6.5
Std RPKM: 2.4
Median RPKM: 11.5
GTEX-13O3P-2326-SM-5KM55 19.3
GTEX-117YX-0826-SM-5H11J 18.7
GTEX-13O3O-2526-SM-5L3DR 18.3
GTEX-14BMV-2426-SM-5S2PP 18.3
GTEX-1339X-1626-SM-5IJDN 18.0
GTEX-148VJ-2626-SM-5QGPI 17.5
GTEX-ZXES-1626-SM-5NQ7L 17.4
GTEX-U3ZH-1326-SM-4DXSF 17.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

37.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 37.8
FF:10014-101C5 62,83,84 years, mixed 37.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.