We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 15.0
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 20.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 14.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 18.0
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 17.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 18.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 17.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 24.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 19.3
Min RPKM: 3.4
Std RPKM: 3.4
Median RPKM: 10.3
GTEX-13FTZ-0726-SM-5IFFY
19.3
GTEX-Q2AG-1126-SM-48U1P
19.2
GTEX-12WSM-0726-SM-5GCOW
17.9
GTEX-13N11-0926-SM-5IJG2
17.5
GTEX-147F4-1426-SM-5LUA8
17.0
GTEX-T6MN-1226-SM-3NMA5
16.9
GTEX-13VXU-0926-SM-5IFFH
16.2
GTEX-QEG4-1826-SM-4R1JN
16.2
GTEX-131YS-1626-SM-5HL6C
16.0
GTEX-11OF3-0726-SM-5BC4Z
15.8
GTEX-REY6-1226-SM-48FDR
15.7
GTEX-Y5V5-0926-SM-4VBPZ
15.7
GTEX-1269C-0626-SM-5FQSS
15.6
GTEX-11ZTS-1426-SM-5EQMM
15.5
GTEX-14A5I-1726-SM-5QGQ5
15.5
GTEX-11ZUS-2526-SM-59872
15.3
GTEX-U3ZN-0226-SM-3DB8D
15.3
GTEX-13N2G-0926-SM-5IFGJ
15.0
GTEX-14DAQ-1726-SM-5S2R2
15.0
GTEX-RN64-1826-SM-48FDV
15.0
GTEX-WZTO-0626-SM-4PQYY
14.9
GTEX-X4EP-1026-SM-4QAS5
14.9
GTEX-13NYB-1026-SM-5IFH3
14.6
GTEX-ZVT3-1626-SM-5GU66
14.5
GTEX-11WQC-0726-SM-5EQMR
14.2
GTEX-SJXC-1226-SM-4DM78
14.1
GTEX-11DXY-0526-SM-5EGGQ
13.7
GTEX-11ZVC-0726-SM-5FQT9
13.5
GTEX-1497J-0726-SM-5Q5D1
13.5
GTEX-RNOR-1426-SM-48FDJ
13.5
GTEX-YECK-1926-SM-4W21H
13.4
GTEX-ZYT6-0626-SM-5E45V
13.4
GTEX-11NV4-1326-SM-5HL6V
13.2
GTEX-139TU-0826-SM-5IJFG
13.2
GTEX-147JS-1126-SM-5RQIW
13.2
GTEX-14AS3-0126-SM-5Q5F4
13.0
GTEX-12WSI-0226-SM-5GCNA
12.9
GTEX-145MF-0826-SM-5QGQA
12.9
GTEX-13SLX-1226-SM-5S2Q6
12.7
GTEX-13QJC-0726-SM-5RQJK
12.6
GTEX-YB5E-0326-SM-5IFHU
12.6
GTEX-131XH-0626-SM-5LZWH
12.3
GTEX-UPIC-0926-SM-4IHLV
12.3
GTEX-X261-1726-SM-4PQYT
12.3
GTEX-145MO-2326-SM-5NQ9K
12.1
GTEX-RTLS-1326-SM-46MUN
12.0
GTEX-1399T-0826-SM-5IFES
11.9
GTEX-12696-0826-SM-5EGGE
11.7
GTEX-Y5LM-0426-SM-4VBRO
11.7
GTEX-XBEC-1526-SM-4AT68
11.6
GTEX-13NZ9-1326-SM-5MR3V
11.3
GTEX-YFC4-1526-SM-5IFJS
11.3
GTEX-139TS-1426-SM-5IFJD
11.2
GTEX-145LU-1326-SM-5LU9N
11.0
GTEX-RU72-1426-SM-46MUF
11.0
GTEX-ZYY3-0626-SM-5NQ6W
10.9
GTEX-11NUK-1226-SM-5P9GM
10.8
GTEX-12KS4-1326-SM-5LUB3
10.5
GTEX-PX3G-0826-SM-48TZS
10.5
GTEX-X4XY-1626-SM-46MVN
10.3
GTEX-132NY-0926-SM-5P9G3
10.1
GTEX-1399R-1226-SM-5P9GF
10.1
GTEX-13OW6-2626-SM-5IFF2
10.0
GTEX-12ZZZ-1326-SM-59HKW
9.8
GTEX-QESD-2026-SM-447BI
9.8
GTEX-ZTPG-1426-SM-51MT3
9.7
GTEX-R53T-0326-SM-48FEC
9.6
GTEX-ZAB4-0826-SM-5LU9D
9.6
GTEX-ZAB5-0426-SM-5CVMI
9.6
GTEX-13PVR-0126-SM-5S2PY
9.5
GTEX-13112-1426-SM-5EGH8
9.4
GTEX-14753-1626-SM-5NQ9L
9.4
GTEX-14E1K-0326-SM-5S2PE
9.3
GTEX-ZF2S-3026-SM-4WWCH
9.3
GTEX-UTHO-2426-SM-4JBHD
9.1
GTEX-11DXZ-0126-SM-5EGGY
8.9
GTEX-13FTW-1126-SM-5J2NV
8.9
GTEX-X4EO-1126-SM-4QARQ
8.9
GTEX-ZVT4-0626-SM-5E45T
8.9
GTEX-13FLV-0326-SM-5N9DJ
8.8
GTEX-13NZB-0626-SM-5IFH6
8.8
GTEX-12WSG-0626-SM-5FQTQ
8.7
GTEX-QV44-0326-SM-4R1KD
8.7
GTEX-13O3O-1826-SM-5IFGW
8.6
GTEX-S33H-1626-SM-4AD68
8.6
GTEX-P78B-1326-SM-3P611
8.5
GTEX-ZVP2-0626-SM-51MSO
8.5
GTEX-RM2N-1926-SM-48FCU
8.4
GTEX-TKQ2-1726-SM-4DXUP
8.4
GTEX-11GSP-0626-SM-5986T
8.2
GTEX-OOBJ-0826-SM-3NB2K
8.2
GTEX-ZPU1-0826-SM-57WG2
8.2
GTEX-1212Z-0226-SM-59HLF
8.0
GTEX-ZZPU-0426-SM-5GZYH
8.0
GTEX-12WSD-1426-SM-5GCN9
7.9
GTEX-WYVS-1926-SM-4PQZ2
7.9
GTEX-X3Y1-2726-SM-4PQZH
7.8
GTEX-ZF29-2026-SM-4WWB7
7.8
GTEX-11EQ9-0526-SM-5A5JZ
7.7
GTEX-UPK5-1426-SM-4JBHH
7.7
GTEX-Q734-0326-SM-48U15
7.6
GTEX-YEC4-0826-SM-5P9FV
7.5
GTEX-QDVN-0826-SM-48TZ2
7.3
GTEX-S32W-1926-SM-4AD63
7.3
GTEX-139YR-0226-SM-5IFEM
7.2
GTEX-XOTO-0826-SM-4B65O
7.1
GTEX-146FH-1526-SM-5NQBU
6.3
GTEX-QEL4-1226-SM-447A4
6.3
GTEX-S4Z8-0526-SM-4AD4T
6.3
GTEX-WFON-1726-SM-4LVMQ
6.3
GTEX-12WSL-0226-SM-5CVMJ
6.2
GTEX-13113-1326-SM-5GCOI
6.1
GTEX-Z9EW-0426-SM-5CVM9
6.1
GTEX-144GM-1326-SM-5LU5E
5.9
GTEX-WQUQ-1926-SM-4OOSA
5.4
GTEX-RWSA-1426-SM-47JXA
5.3
GTEX-131XE-0326-SM-5LZVO
4.7
GTEX-14C38-1526-SM-5RQJ7
4.2
GTEX-VUSG-0126-SM-4KL1X
3.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.