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ABHD10
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TISSUE ATLAS PRIMARY DATA LIVER

GENE/PROTEIN

Antibody validation


Dictionary

Liver

Tissue proteome

Liver

LIVER - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:17.5TPM
GTEx:10.9RPKM
FANTOM5:26.2Tags Per Million

LIVER - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Bile duct cells:Low
Hepatocytes:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA036991

 

Antibody HPA036992

 

Bile duct cells

Low   Low  

Hepatocytes

Low   Medium  
   
   
   

LIVER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

17.5

N/A Female, age 60
Sample 1
TPM: 15.2
overview Male, age 54
Sample 2
TPM: 12.6
Cell types%
Hepatocytes: 80
Fibroblasts: 15
Other cell types: 5
overview Male, age 74
Sample 3
TPM: 15.0
Cell types%
Hepatocytes: 85
Fibroblasts: 5
Other cell types: 10
overview Female, age 62
Sample 4
TPM: 20.8
Cell types%
Hepatocytes: 70
Fibroblasts: 10
Other cell types: 20
overview Male, age 78
Sample 5
TPM: 14.8
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Male, age 53
Sample 6
TPM: 18.0
Cell types%
Hepatocytes: 80
Fibroblasts: 5
Other cell types: 15
overview Male, age 77
Sample 7
TPM: 17.3
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Female, age 72
Sample 8
TPM: 18.9
Cell types%
Hepatocytes: 50
Fibroblasts: 10
Other cell types: 40
overview Male, age 70
Sample 9
TPM: 17.1
Cell types%
Hepatocytes: 65
Fibroblasts: 10
Other cell types: 25
overview Female, age 23
Sample 10
TPM: 24.9
Cell types%
Hepatocytes: 70
Fibroblasts: 5
Other cell types: 25

LIVER - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

10.9

GTEx sample id

RPKM

 

Liver

Liver
RPKM: 10.9
Samples: 119

Max RPKM: 19.3
Min RPKM: 3.4
Std RPKM: 3.4
Median RPKM: 10.3
GTEX-13FTZ-0726-SM-5IFFY 19.3
GTEX-Q2AG-1126-SM-48U1P 19.2
GTEX-12WSM-0726-SM-5GCOW 17.9
GTEX-13N11-0926-SM-5IJG2 17.5
GTEX-147F4-1426-SM-5LUA8 17.0
GTEX-T6MN-1226-SM-3NMA5 16.9
GTEX-13VXU-0926-SM-5IFFH 16.2
GTEX-QEG4-1826-SM-4R1JN 16.2
GTEX-131YS-1626-SM-5HL6C 16.0
GTEX-11OF3-0726-SM-5BC4Z 15.8
GTEX-REY6-1226-SM-48FDR 15.7
GTEX-Y5V5-0926-SM-4VBPZ 15.7
GTEX-1269C-0626-SM-5FQSS 15.6
GTEX-11ZTS-1426-SM-5EQMM 15.5
GTEX-14A5I-1726-SM-5QGQ5 15.5
GTEX-11ZUS-2526-SM-59872 15.3
GTEX-U3ZN-0226-SM-3DB8D 15.3
GTEX-13N2G-0926-SM-5IFGJ 15.0
GTEX-14DAQ-1726-SM-5S2R2 15.0
GTEX-RN64-1826-SM-48FDV 15.0
GTEX-WZTO-0626-SM-4PQYY 14.9
GTEX-X4EP-1026-SM-4QAS5 14.9
GTEX-13NYB-1026-SM-5IFH3 14.6
GTEX-ZVT3-1626-SM-5GU66 14.5
GTEX-11WQC-0726-SM-5EQMR 14.2
GTEX-SJXC-1226-SM-4DM78 14.1
GTEX-11DXY-0526-SM-5EGGQ 13.7
GTEX-11ZVC-0726-SM-5FQT9 13.5
GTEX-1497J-0726-SM-5Q5D1 13.5
GTEX-RNOR-1426-SM-48FDJ 13.5
GTEX-YECK-1926-SM-4W21H 13.4
GTEX-ZYT6-0626-SM-5E45V 13.4
GTEX-11NV4-1326-SM-5HL6V 13.2
GTEX-139TU-0826-SM-5IJFG 13.2
GTEX-147JS-1126-SM-5RQIW 13.2
GTEX-14AS3-0126-SM-5Q5F4 13.0
GTEX-12WSI-0226-SM-5GCNA 12.9
GTEX-145MF-0826-SM-5QGQA 12.9
GTEX-13SLX-1226-SM-5S2Q6 12.7
GTEX-13QJC-0726-SM-5RQJK 12.6
GTEX-YB5E-0326-SM-5IFHU 12.6
GTEX-131XH-0626-SM-5LZWH 12.3
GTEX-UPIC-0926-SM-4IHLV 12.3
GTEX-X261-1726-SM-4PQYT 12.3
GTEX-145MO-2326-SM-5NQ9K 12.1
GTEX-RTLS-1326-SM-46MUN 12.0
GTEX-1399T-0826-SM-5IFES 11.9
GTEX-12696-0826-SM-5EGGE 11.7
GTEX-Y5LM-0426-SM-4VBRO 11.7
GTEX-XBEC-1526-SM-4AT68 11.6
GTEX-13NZ9-1326-SM-5MR3V 11.3
GTEX-YFC4-1526-SM-5IFJS 11.3
GTEX-139TS-1426-SM-5IFJD 11.2
GTEX-145LU-1326-SM-5LU9N 11.0
GTEX-RU72-1426-SM-46MUF 11.0
GTEX-ZYY3-0626-SM-5NQ6W 10.9
GTEX-11NUK-1226-SM-5P9GM 10.8
GTEX-12KS4-1326-SM-5LUB3 10.5
GTEX-PX3G-0826-SM-48TZS 10.5
GTEX-X4XY-1626-SM-46MVN 10.3
GTEX-132NY-0926-SM-5P9G3 10.1
GTEX-1399R-1226-SM-5P9GF 10.1
GTEX-13OW6-2626-SM-5IFF2 10.0
GTEX-12ZZZ-1326-SM-59HKW 9.8
GTEX-QESD-2026-SM-447BI 9.8
GTEX-ZTPG-1426-SM-51MT3 9.7
GTEX-R53T-0326-SM-48FEC 9.6
GTEX-ZAB4-0826-SM-5LU9D 9.6
GTEX-ZAB5-0426-SM-5CVMI 9.6
GTEX-13PVR-0126-SM-5S2PY 9.5
GTEX-13112-1426-SM-5EGH8 9.4
GTEX-14753-1626-SM-5NQ9L 9.4
GTEX-14E1K-0326-SM-5S2PE 9.3
GTEX-ZF2S-3026-SM-4WWCH 9.3
GTEX-UTHO-2426-SM-4JBHD 9.1
GTEX-11DXZ-0126-SM-5EGGY 8.9
GTEX-13FTW-1126-SM-5J2NV 8.9
GTEX-X4EO-1126-SM-4QARQ 8.9
GTEX-ZVT4-0626-SM-5E45T 8.9
GTEX-13FLV-0326-SM-5N9DJ 8.8
GTEX-13NZB-0626-SM-5IFH6 8.8
GTEX-12WSG-0626-SM-5FQTQ 8.7
GTEX-QV44-0326-SM-4R1KD 8.7
GTEX-13O3O-1826-SM-5IFGW 8.6
GTEX-S33H-1626-SM-4AD68 8.6
GTEX-P78B-1326-SM-3P611 8.5
GTEX-ZVP2-0626-SM-51MSO 8.5
GTEX-RM2N-1926-SM-48FCU 8.4
GTEX-TKQ2-1726-SM-4DXUP 8.4
GTEX-11GSP-0626-SM-5986T 8.2
GTEX-OOBJ-0826-SM-3NB2K 8.2
GTEX-ZPU1-0826-SM-57WG2 8.2
GTEX-1212Z-0226-SM-59HLF 8.0
GTEX-ZZPU-0426-SM-5GZYH 8.0
GTEX-12WSD-1426-SM-5GCN9 7.9
GTEX-WYVS-1926-SM-4PQZ2 7.9
GTEX-X3Y1-2726-SM-4PQZH 7.8
GTEX-ZF29-2026-SM-4WWB7 7.8
GTEX-11EQ9-0526-SM-5A5JZ 7.7
GTEX-UPK5-1426-SM-4JBHH 7.7
GTEX-Q734-0326-SM-48U15 7.6
GTEX-YEC4-0826-SM-5P9FV 7.5
GTEX-QDVN-0826-SM-48TZ2 7.3
GTEX-S32W-1926-SM-4AD63 7.3
GTEX-139YR-0226-SM-5IFEM 7.2
GTEX-XOTO-0826-SM-4B65O 7.1
GTEX-146FH-1526-SM-5NQBU 6.3
GTEX-QEL4-1226-SM-447A4 6.3
GTEX-S4Z8-0526-SM-4AD4T 6.3
GTEX-WFON-1726-SM-4LVMQ 6.3
GTEX-12WSL-0226-SM-5CVMJ 6.2
GTEX-13113-1326-SM-5GCOI 6.1
GTEX-Z9EW-0426-SM-5CVM9 6.1
GTEX-144GM-1326-SM-5LU5E 5.9
GTEX-WQUQ-1926-SM-4OOSA 5.4
GTEX-RWSA-1426-SM-47JXA 5.3
GTEX-131XE-0326-SM-5LZVO 4.7
GTEX-14C38-1526-SM-5RQJ7 4.2
GTEX-VUSG-0126-SM-4KL1X 3.4
Show all

LIVER - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

26.2

FANTOM5 sample id

Sample description

Tags Per Million

Liver
Tags Per Million: 26.2
FF:10018-101C9 64,69,70 years, mixed 26.2

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The Human Protein Atlas project is funded
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