Tissue expression of NICN1 - Summary - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

NICN1

TISSUE

premium

CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	NICN1
Gene description	Nicolin 1
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	3
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Estimation of protein expression could not be performed. View primary data.

DATA RELIABILITY
Data reliability description	RNA-based expert annotation gave inconclusive results. Pending external verification. Antibody staining not consistent with RNA expression data.
Reliability score	Uncertain based on 1 antibody. HPA037550
	SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

N/A

Caudate

N/A

N/A

Cerebellum

N/A

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

N/A

Bronchus

N/A

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

N/A

Skin

N/A

Skin

N/A

Cerebral cortex

Urinary bladder

PROTEIN EXPRESSION OVERVIEW
RNA-based expert annotation could not be performed, due to inconclusive results. View immunohistochemistry primary data.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	NICN1 (HGNC Symbol)
Synonyms	MGC12936
Description	Nicolin 1 (HGNC Symbol)
Entrez gene summary	This protein encoded by this gene localizes to the nucleus and is expressed in numerous tissues including brain, testis, liver, and kidney. This refseq contains genomic sequence in its 3' UTR which is not supported by experimental evidence. Computer predictions indicate that this region of the 3' UTR contains hairpin-forming self-complementary sequence which is possibly excised after transcription. This gene has a pseudogene on chromosome X. [provided by RefSeq, Jul 2008]
Chromosome	3
Cytoband	p21.31
Chromosome location (bp)	49422946 - 49429326
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000145029 (version 83.38)
Entrez gene	84276
UniProt	Q9BSH3 (UniProt - Evidence at transcript level)
neXtProt	NX_Q9BSH3
Antibodypedia	NICN1 antibodies

PROTEIN BROWSER

NICN1-002	NICN1-006	NICN1-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
NICN1-002 ENSP00000273598 ENST00000273598	Q9BSH3 [Direct mapping] Nicolin-1 B2R7Q3 [Target identity:100%; Query identity:100%] HCG2001997, isoform CRA_c; cDNA FLJ36929 fis, clone BRACE2005231, highly similar to Nicolin-1; cDNA, FLJ93554, Homo sapiens nicolin 1 (NICN1), mRNA Show all	Predicted intracellular proteins Show all	GO:0005634 [nucleus] GO:0005874 [microtubule] Show all	213 aa 24.2 kDa	No	0
NICN1-006 ENSP00000402335 ENST00000436744	B4DX77 [Direct mapping] Nicolin-1; cDNA FLJ52908, highly similar to Nicolin-1 Show all	Predicted intracellular proteins Show all		175 aa 19.7 kDa	No	0
NICN1-201 ENSP00000478287 ENST00000615713	Q9BSH3 [Direct mapping] Nicolin-1 B2R7Q3 [Target identity:100%; Query identity:100%] HCG2001997, isoform CRA_c; cDNA FLJ36929 fis, clone BRACE2005231, highly similar to Nicolin-1; cDNA, FLJ93554, Homo sapiens nicolin 1 (NICN1), mRNA Show all	Predicted intracellular proteins Show all	GO:0005634 [nucleus] GO:0005874 [microtubule] Show all	213 aa 24.2 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.