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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:146.4RPKM
FANTOM5:136.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:Medium
 

Antibody staining

Antibody HPA042492

 

Antibody HPA044839

 

Glial cells

Low   High  

Neuronal cells

Low   Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

146.4

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 146.4
Samples: 117

Max RPKM: 263.8
Min RPKM: 45.8
Std RPKM: 42.5
Median RPKM: 142.3
GTEX-ZE7O-0011-R5a-SM-57WBO 263.8
GTEX-12WSB-0011-R5b-SM-5GU67 243.3
GTEX-13JVG-0011-R5a-SM-5MR4O 236.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 230.2
GTEX-ZV68-0011-R5a-SM-4YCDW 227.3
GTEX-T6MN-0011-R5A-SM-32QPD 227.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 217.9
GTEX-13CZV-0011-R5a-SM-5K7XA 210.2
GTEX-1445S-0011-R5a-SM-5PNUS 209.6
GTEX-P44H-0011-R5A-SM-2XCEX 209.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 209.3
GTEX-11GSP-0011-R5a-SM-57WBE 206.2
GTEX-WVLH-0011-R5A-SM-3MJFW 203.2
GTEX-139TT-0011-R5b-SM-5K7W8 200.0
GTEX-ZVT3-0011-R5a-SM-51MSI 195.6
GTEX-11WQC-0011-R5a-SM-5BC74 195.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 191.3
GTEX-13X6I-0011-R5a-SM-5PNWW 191.0
GTEX-RU72-0011-R5A-SM-2TF6U 190.8
GTEX-11H98-0011-R5b-SM-57WCF 188.3
GTEX-X261-0011-R5A-SM-3NMB4 188.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 187.5
GTEX-QVJO-0011-R5A-SM-2S1QM 184.8
GTEX-N7MT-0011-R5a-SM-2I3G6 184.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 183.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 183.6
GTEX-NPJ7-0011-R5a-SM-33HBK 182.5
GTEX-XMD1-0011-R5A-SM-4AT47 182.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 180.0
GTEX-13OW6-0011-R5a-SM-5O9BK 178.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 174.7
GTEX-S7PM-0011-R5A-SM-3NM8G 173.2
GTEX-131YS-0011-R5b-SM-5K7YB 172.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 169.4
GTEX-OHPN-0011-R5A-SM-2I5FF 167.6
GTEX-139TS-0011-R5b-SM-5J2MZ 165.9
GTEX-ZXG5-0011-R5b-SM-57WBN 165.4
GTEX-RVPV-0011-R5A-SM-2TF69 164.5
GTEX-S7SE-0011-R5A-SM-2XCDA 163.2
GTEX-13CIG-0011-R5b-SM-5L3F2 161.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 160.9
GTEX-OXRN-0011-R5A-SM-2I5EF 160.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 160.0
GTEX-13FLV-0011-R5a-SM-5LZWT 155.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 155.6
GTEX-R55E-0011-R5A-SM-2TC5N 154.3
GTEX-12WSA-0011-R5b-SM-5GU5I 154.0
GTEX-YFC4-0011-R5a-SM-4RGLR 153.4
GTEX-13112-0011-R5b-SM-5DUV8 152.9
GTEX-144GO-0011-R5a-SM-5PNUR 152.6
GTEX-13OVH-0011-R5b-SM-5KM4L 151.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 151.5
GTEX-ZUA1-0011-R5b-SM-51MTG 150.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 148.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 148.2
GTEX-12WSD-0011-R5b-SM-5CVNG 146.6
GTEX-NL4W-0011-R5a-SM-2I3GD 146.5
GTEX-13X6K-0011-R5b-SM-5PNUE 143.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 142.3
GTEX-11UD1-0011-R5b-SM-5P9FP 140.6
GTEX-13OVL-0011-R5b-SM-5L3FU 139.8
GTEX-13G51-0011-R5a-SM-5L3EB 139.6
GTEX-13NYS-0011-R5a-SM-5MR4D 139.1
GTEX-TSE9-0011-R5A-SM-3DB7J 138.3
GTEX-13CF2-0011-R5a-SM-5LZWS 137.9
GTEX-T2IS-0011-R5A-SM-32QP4 136.9
GTEX-13JUV-0011-R5a-SM-5LZY5 135.8
GTEX-PVOW-0011-R5A-SM-32PL7 134.9
GTEX-14BIN-0011-R5b-SM-5SI78 134.7
GTEX-12ZZX-0011-R5a-SM-5HL89 134.6
GTEX-XOTO-0011-R5A-SM-4B657 134.4
GTEX-WWYW-0011-R5A-SM-3NB3E 134.3
GTEX-RVPU-0011-R5A-SM-2XCAD 126.5
GTEX-12WSC-0011-R5b-SM-5CVNS 125.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 125.9
GTEX-13OW7-0011-R5b-SM-5O9DM 125.9
GTEX-14ABY-0011-R5b-SM-5SI7B 124.6
GTEX-WZTO-0011-R5B-SM-3NMC5 123.4
GTEX-14BIM-0011-R5b-SM-5S2RM 122.8
GTEX-YJ89-0011-R5a-SM-4V6GM 122.6
GTEX-11OF3-0011-R5a-SM-57WB4 121.7
GTEX-T5JC-0011-R5A-SM-32PLK 121.6
GTEX-132Q8-0011-R5a-SM-5IJDM 121.1
GTEX-13FXS-0011-R5b-SM-5LZYE 120.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 119.7
GTEX-UTHO-0011-R5A-SM-3GIJD 118.5
GTEX-1477Z-0011-R5b-SM-5PNUO 118.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 115.5
GTEX-13X6J-0011-R5b-SM-5PNWT 113.0
GTEX-N7MS-0011-R5a-SM-2HMK8 112.4
GTEX-QMR6-0011-R5A-SM-32PKT 112.4
GTEX-13VXU-0011-R5a-SM-5O9D7 111.9
GTEX-145LS-0011-R5a-SM-5SI65 110.6
GTEX-12WSF-0011-R5a-SM-5HL8K 108.5
GTEX-13OW5-0011-R5b-SM-5L3FR 108.2
GTEX-13NYB-0011-R5a-SM-5MR45 107.8
GTEX-139T8-0011-R5b-SM-5J1MO 106.8
GTEX-13FLW-0011-R5a-SM-5LZX6 106.2
GTEX-NL3H-0011-R5a-SM-2I3GB 105.1
GTEX-12WSH-0011-R5b-SM-5P9F3 102.9
GTEX-145MG-0011-R5b-SM-5S2VU 101.9
GTEX-144GL-0011-R5b-SM-5PNUJ 101.4
GTEX-13S7M-0011-R5b-SM-5P9HS 100.9
GTEX-1313W-0011-R5b-SM-5L3EP 98.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 97.5
GTEX-13SLX-0011-R5a-SM-5O9BV 97.1
GTEX-13NZA-0011-R5b-SM-5KM4K 94.7
GTEX-11NV4-0011-R5a-SM-5NQ88 93.5
GTEX-145MH-0011-R5a-SM-5P9JT 91.9
GTEX-13O3O-0011-R5b-SM-5KM44 87.3
GTEX-1399T-0011-R5b-SM-5IJDK 87.0
GTEX-13FHP-0011-R5b-SM-5LZY2 84.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 83.0
GTEX-X4XX-0011-R5A-SM-46MWN 80.4
GTEX-WL46-0011-R5A-SM-3LK6V 49.9
GTEX-Z93S-0011-R5b-SM-4RGNI 48.5
GTEX-X585-0011-R5A-SM-46MVI 45.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

136.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 136.2
FF:10164-103B2 76 years, female 190.7
FF:10379-105H1 89 years, female 81.7

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