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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:100.7TPM
GTEx:31.6RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glial cells:Low
Neuronal cells:Medium
Neuropil:Low
 

Antibody staining

Antibody HPA018520

 

Antibody HPA021051

 

Antibody HPA029426

 

Endothelial cells

High   Low   Not detected  

Glial cells

Low   Low   Low  

Neuronal cells

Medium   Medium   Medium  

Neuropil

Low   Low   Medium  
     
     
     

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

100.7

N/A Male, age 5
Sample 1
TPM: 100.2
overview Female, age 40
Sample 2
TPM: 81.2
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 120.8
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

31.6

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 28.6
Samples: 114

Max RPKM: 44
Min RPKM: 14
Std RPKM: 6.3
Median RPKM: 28.7
GTEX-13NYS-3126-SM-5KLYV 44.0
GTEX-PVOW-2526-SM-2XCF7 43.0
GTEX-13NYC-2826-SM-5K7WR 42.3
GTEX-QMR6-1426-SM-32PLA 41.9
GTEX-132Q8-3026-SM-5PNVG 39.9
GTEX-X585-3026-SM-46MWF 39.6
GTEX-TSE9-3026-SM-3DB76 39.1
GTEX-WZTO-2926-SM-3NM9I 38.9
GTEX-WWYW-3126-SM-3NB39 38.2
GTEX-UTHO-3026-SM-3GAFB 37.9
GTEX-12WSH-3026-SM-5CVNI 36.7
GTEX-11OC5-0726-SM-5P9JK 35.9
GTEX-13FHO-3026-SM-5J1O9 35.7
GTEX-WHSE-3026-SM-3P5ZH 35.5
GTEX-145MH-3026-SM-5Q5DZ 35.0
GTEX-14BMV-3026-SM-5S2PQ 34.9
GTEX-ZUA1-3026-SM-59HJC 34.8
GTEX-13FXS-3126-SM-5J2NN 34.5
GTEX-T2IS-3026-SM-32QPM 34.5
GTEX-WVLH-3026-SM-3MJG9 34.5
GTEX-11DXY-3226-SM-5GIDE 34.4
GTEX-131YS-3126-SM-5KLYT 34.3
GTEX-QVJO-1426-SM-2S1QY 34.3
GTEX-11OF3-2926-SM-5HL78 34.0
GTEX-RNOR-2326-SM-2TF4I 33.7
GTEX-NPJ8-1526-SM-2D7VU 33.2
GTEX-XLM4-3026-SM-4AT6L 33.2
GTEX-11NUK-2926-SM-5A5MD 32.9
GTEX-X4XX-3026-SM-3NMB2 32.7
GTEX-WL46-2926-SM-3LK82 32.6
GTEX-11O72-2926-SM-5BC4V 32.3
GTEX-13SLX-3126-SM-5S2Q5 32.0
GTEX-145LS-3126-SM-5Q5BY 32.0
GTEX-11WQK-3026-SM-5EQL6 31.9
GTEX-ZYFD-3026-SM-5E44C 31.8
GTEX-T5JC-2426-SM-3NMDB 31.7
GTEX-T6MN-2626-SM-32PMQ 31.3
GTEX-13OVH-3026-SM-5MR4N 31.1
GTEX-QDT8-2926-SM-32PKC 31.1
GTEX-ZAK1-3026-SM-5S2MJ 31.1
GTEX-14ASI-3026-SM-5S2PN 31.0
GTEX-12ZZX-2926-SM-5GCOQ 30.9
GTEX-145MG-3026-SM-5RQJA 30.7
GTEX-12WSC-3026-SM-5GCNF 30.6
GTEX-12ZZZ-3026-SM-5BC67 30.5
GTEX-13FLW-1426-SM-5K7YE 30.3
GTEX-13O3O-3126-SM-5KM3H 30.3
GTEX-144FL-3026-SM-5O99C 30.2
GTEX-12126-1026-SM-5P9JJ 30.1
GTEX-13OW6-3026-SM-5J2MI 29.9
GTEX-YFC4-3126-SM-5PNV6 29.9
GTEX-11PRG-2926-SM-5987A 29.4
GTEX-13IVO-2926-SM-5L3CZ 29.4
GTEX-ZVT3-3026-SM-5E43N 29.3
GTEX-11DXW-1126-SM-5H12Q 29.2
GTEX-117XS-3026-SM-5N9CA 28.8
GTEX-OXRN-2426-SM-2I5EQ 28.8
GTEX-14A5I-2926-SM-5Q5CQ 28.7
GTEX-11ZUS-2926-SM-5FQSL 28.4
GTEX-XOTO-3026-SM-4B65M 28.4
GTEX-Y8DK-0826-SM-4TT3T 28.3
GTEX-111FC-3126-SM-5GZZ2 28.2
GTEX-1313W-3126-SM-5LZUI 28.2
GTEX-144GL-3026-SM-5Q5CW 28.2
GTEX-NPJ7-2726-SM-2I3FT 27.8
GTEX-1192X-3126-SM-5N9BY 27.6
GTEX-13QIC-2926-SM-5J2NF 27.6
GTEX-R55F-1326-SM-5S2V4 27.4
GTEX-Z93S-2926-SM-57WB9 27.4
GTEX-11GSO-2926-SM-5HL73 27.3
GTEX-RU72-3026-SM-5SI7Y 27.1
GTEX-YJ89-3026-SM-5IFJI 27.1
GTEX-1128S-2726-SM-5H12C 27.0
GTEX-13VXU-2926-SM-5LU5C 26.9
GTEX-1399T-3026-SM-5KLZC 26.8
GTEX-QVUS-2826-SM-3GADB 26.6
GTEX-11ONC-2926-SM-5P9JM 26.2
GTEX-12ZZW-2926-SM-5LZUP 26.0
GTEX-13NYB-3026-SM-5IJD7 25.6
GTEX-13OW8-2826-SM-5L3GC 25.5
GTEX-12ZZY-3026-SM-5GCOU 25.4
GTEX-13OVJ-2826-SM-5L3GW 25.3
GTEX-145MF-2726-SM-5O995 24.5
GTEX-13O3Q-2926-SM-5KM45 24.2
GTEX-ZAJG-3126-SM-5HL9J 24.1
GTEX-13FHP-3026-SM-5IJBS 23.5
GTEX-Q2AG-2926-SM-2HMJ3 23.3
GTEX-13X6J-3026-SM-5Q5CU 23.1
GTEX-13PL6-3126-SM-5LUAR 23.0
GTEX-ZE7O-3126-SM-5HL5X 23.0
GTEX-ZZPT-3026-SM-5GZXH 22.9
GTEX-11EMC-3226-SM-5EGKW 22.6
GTEX-11GS4-3126-SM-5A5LH 22.4
GTEX-13S7M-3126-SM-5RQJQ 22.3
GTEX-13PVQ-3026-SM-5SI93 22.2
GTEX-Y111-2726-SM-4TT3N 22.1
GTEX-139T8-1026-SM-5J2MC 21.7
GTEX-PWO3-0926-SM-2I5EY 21.7
GTEX-11EI6-3026-SM-5GZZO 21.4
GTEX-13X6K-2926-SM-5Q5D5 21.3
GTEX-1117F-3226-SM-5N9CT 21.1
GTEX-N7MT-1126-SM-5SI7V 20.7
GTEX-13JVG-3126-SM-5L3FH 20.5
GTEX-131XW-3126-SM-5LZUC 19.8
GTEX-13OW7-3026-SM-5L3GY 19.5
GTEX-11TTK-2926-SM-5PNYP 19.4
GTEX-13JUV-2926-SM-5LZX7 18.0
GTEX-13G51-3026-SM-5IJB8 17.8
GTEX-11GSP-3226-SM-5986O 17.6
GTEX-12WSD-3126-SM-5HL7P 17.1
GTEX-1445S-3026-SM-5O9BR 15.6
GTEX-12WSA-2926-SM-5EQ4D 15.1
GTEX-147GR-3026-SM-5S2ML 14.9
GTEX-11NV4-2126-SM-5N9DS 14.0
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 34.8
Samples: 108

Max RPKM: 63.4
Min RPKM: 12.6
Std RPKM: 10.1
Median RPKM: 35.9
GTEX-13N2G-0011-R10a-SM-5MR34 63.4
GTEX-WWYW-0011-R10A-SM-3NB35 54.3
GTEX-13NYS-0011-R10a-SM-5MR4S 53.1
GTEX-QDT8-0011-R10A-SM-32PKG 50.2
GTEX-QVUS-0011-R10A-SM-3GIK3 49.5
GTEX-13QJC-0011-R10a-SM-5SI63 49.3
GTEX-NPJ8-0011-R10A-SM-2YUMO 48.8
GTEX-X585-0011-R10A-SM-46MUY 48.8
GTEX-T6MN-0011-R10A-SM-32QP7 48.2
GTEX-NL3H-0011-R10A-SM-2I3E9 48.0
GTEX-13RTJ-0011-R10b-SM-5O9CW 47.3
GTEX-132Q8-0011-R10b-SM-5DUWZ 46.6
GTEX-X4EP-0011-R10B-SM-4QASJ 46.0
GTEX-WVLH-0011-R10A-SM-3MJFM 45.8
GTEX-X4XX-0011-R10B-SM-46MWO 45.3
GTEX-13O3O-0011-R10a-SM-5LUA9 44.4
GTEX-NPJ7-0011-R10A-SM-2I3E5 44.4
GTEX-QMR6-0011-R10A-SM-32PKO 44.3
GTEX-13SLX-0011-R10a-SM-5P9HV 44.2
GTEX-QVJO-0011-R10A-SM-2S1QJ 44.1
GTEX-WL46-0011-R10A-SM-3MJFQ 43.9
GTEX-14ASI-0011-R10b-SM-5S2VZ 43.7
GTEX-145MG-0011-R10a-SM-5PNWG 43.5
GTEX-12ZZY-0011-R10b-SM-5HL7W 43.2
GTEX-P44H-0011-R10A-SM-2XCEK 43.1
GTEX-12WSC-0011-R10a-SM-5GU57 42.2
GTEX-WZTO-0011-R10B-SM-4E3KB 42.0
GTEX-12WSH-0011-R10a-SM-5LZUS 41.9
GTEX-S7SE-0011-R10A-SM-2XCDF 41.7
GTEX-13CZV-0011-R10b-SM-5LZYD 41.6
GTEX-14BIN-0011-R10a-SM-5S2UA 41.5
GTEX-13X6I-0011-R10a-SM-5PNWI 40.6
GTEX-1313W-0011-R10b-SM-5DUXA 40.5
GTEX-13S7M-0011-R10b-SM-5PNZB 40.4
GTEX-12ZZX-0011-R10b-SM-5DUWK 40.3
GTEX-T5JC-0011-R10A-SM-32PM2 40.3
GTEX-YFC4-0011-R10a-SM-4SOK5 40.0
GTEX-Y8DK-0011-R10A-SM-4SOK1 39.5
GTEX-ZF28-0011-R10a-SM-4WWEH 39.5
GTEX-145MH-0011-R10b-SM-5PNUK 39.2
GTEX-13QIC-0011-R10a-SM-5O9C7 39.1
GTEX-13O3Q-0011-R10b-SM-5KM39 38.9
GTEX-12WSE-0011-R10b-SM-5P9JV 38.3
GTEX-147GR-0011-R10b-SM-5S2UM 38.3
GTEX-12WSF-0011-R10a-SM-5LZVH 38.1
GTEX-13FHO-0011-R10b-SM-5J2MM 38.1
GTEX-14BIL-0011-R10a-SM-5SI75 37.2
GTEX-N7MT-0011-R10A-SM-2I3E1 37.2
GTEX-13X6K-0011-R10a-SM-5P9JR 37.0
GTEX-13N1W-0011-R10b-SM-5MR4H 36.8
GTEX-XLM4-0011-R10A-SM-4AT5P 36.8
GTEX-ZVZQ-0011-R10b-SM-51MRT 36.8
GTEX-131YS-0011-R10b-SM-5EQ5N 36.7
GTEX-11H98-0011-R10b-SM-5NQ98 36.5
GTEX-Q2AG-0011-R10A-SM-2HMLA 35.4
GTEX-131XH-0011-R10a-SM-5EGLJ 35.2
GTEX-11WQK-0011-R10a-SM-5BC6R 34.9
GTEX-12WSM-0011-R10a-SM-5DUWV 34.5
GTEX-YJ89-0011-R10a-SM-4SOK9 34.3
GTEX-13X6J-0011-R10b-SM-5PNWA 34.1
GTEX-13FXS-0011-R10a-SM-5J2MA 34.0
GTEX-TSE9-0011-R10A-SM-3DB7O 33.8
GTEX-OXRN-0011-R10A-SM-2I5GC 33.5
GTEX-13OW7-0011-R10a-SM-5L3H3 33.4
GTEX-13FLW-0011-R10b-SM-5LZZF 33.2
GTEX-Z93S-0011-R10a-SM-4RGNM 33.2
GTEX-145LS-0011-R10a-SM-5PNUQ 32.7
GTEX-OXRO-0011-R10A-SM-2I5EH 32.4
GTEX-12126-0011-R10b-SM-5BC6T 32.1
GTEX-12ZZZ-0011-R10a-SM-5P9HC 32.0
GTEX-ZUA1-0011-R10a-SM-51MT6 31.8
GTEX-13NYB-0011-R10a-SM-5KM43 31.6
GTEX-N7MS-0011-R10A-SM-2HMJK 31.6
GTEX-ZAB4-0011-R10a-SM-4SOKH 31.2
GTEX-11ZUS-0011-R10b-SM-5BC79 30.2
GTEX-RVPU-0011-R10A-SM-2XCAH 30.0
GTEX-ZVT3-0011-R10b-SM-57WB6 29.9
GTEX-ZDXO-0011-R10a-SM-4WWD8 29.7
GTEX-13OW6-0011-R10a-SM-5L3HE 29.3
GTEX-13OVL-0011-R10a-SM-5L3GS 28.7
GTEX-X261-0011-R10B-SM-4E3JT 28.7
GTEX-NL4W-0011-R10A-SM-2I3DY 27.7
GTEX-145LU-0011-R10a-SM-5PNWJ 27.1
GTEX-147F4-0011-R10b-SM-5S2WC 26.8
GTEX-13OVJ-0011-R10b-SM-5L3HT 26.7
GTEX-13JUV-0011-R10b-SM-5LZXR 25.6
GTEX-13OW8-0011-R10a-SM-5L3H6 25.4
GTEX-13SLW-0011-R10a-SM-5S2UI 25.4
GTEX-12ZZW-0011-R10b-SM-5HL9X 25.2
GTEX-13FTZ-0011-R10b-SM-5KLZS 24.4
GTEX-13FLV-0011-R10b-SM-5LZZ2 23.8
GTEX-13G51-0011-R10b-SM-5LZYF 23.1
GTEX-XMD1-0011-R10A-SM-4AT4A 21.8
GTEX-13IVO-0011-R10a-SM-5LZY3 21.7
GTEX-12WSD-0011-R10b-SM-5GU79 21.2
GTEX-139TS-0011-R10a-SM-5K7TU 20.4
GTEX-11WQC-0011-R10a-SM-57WCT 19.8
GTEX-13NZA-0011-R10b-SM-5KM54 19.8
GTEX-11GSP-0011-R10a-SM-5NQ7J 18.9
GTEX-12WSA-0011-R10b-SM-5P9ET 18.5
GTEX-1445S-0011-R10a-SM-5PNWB 18.4
GTEX-ZXG5-0011-R10a-SM-57WDD 17.8
GTEX-ZV68-0011-R10a-SM-51MT7 15.3
GTEX-14753-0011-R10b-SM-5S2WE 14.9
GTEX-ZE7O-0011-R10a-SM-57WAZ 14.5
GTEX-13JVG-0011-R10b-SM-5KM2P 13.6
GTEX-131XW-0011-R10a-SM-5DUVA 12.8
GTEX-1477Z-0011-R10b-SM-5S2RF 12.6
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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