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Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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HOXB13
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA062852

 

Antibody HPA065019

 

Antibody CAB004438

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  Santa Cruz Biotechnology
 

Product name

HPA062852   HPA065019   sc-28333  

Host species

Rabbit   Rabbit   Mouse  

Clonality

pAb   pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G  

Other gene match

     

Released in version

14   14   3  

References

     

VALIDATION SUMMARY

 
 

Antibody HPA062852

 

Antibody HPA065019

 

Antibody CAB004438

 
Immunocytochemistry


Validated
 

Validated
   
Immunohistochemistry


Validated
  Supported  

Validated
 
Western blot

Uncertain   Uncertain   Uncertain  
Protein array

Supported   Supported    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA062852

 

Antibody HPA065019

 

Antibody CAB004438

 

Formal validation: Independent

Validated

Antibody staining overlaps with antibody HPA065019.
 
Validated

Antibody staining overlaps with antibody HPA062852.
   
 

Standard validation

Supported   Supported    

     

Figure description

Immunofluorescent staining of human cell line PC-3 shows localization to nucleoplasm.   Immunofluorescent staining of human cell line PC-3 shows localization to nucleoplasm.    

Antibody dilution

1:47   1:96    

Literature conformity

The subcellular location is supported by literature.   The subcellular location is supported by literature.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA062852

 

Antibody HPA065019

 

Antibody CAB004438

 

Formal validation: Orthogonal

   
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 

   
 

 

 

Figure description

    Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.  
 

Formal validation: Orthogonal

Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
   
Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
 

 

 

   
 

 

 

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 37 tissues.     Distribution of protein expression (antibody staining) and RNA expression (TPM) across 37 tissues.  
 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunohistochemical staining of human prostate shows moderate nuclear positivity in glandular cells.   Immunohistochemical staining of human prostate shows strong nuclear positivity in glandular cells.   Immunohistochemical staining of human rectum shows strong nuclear positivity in glandular cells.  

Expression

RNA: detected in 3 tissues
Protein: detected in 8 cell types
  RNA: detected in 3 tissues
Protein: detected in 20 cell types
  RNA: detected in 3 tissues
Protein: detected in 5 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:300   1:1600   1:50  

Literature conformity

Partly consistent with gene/protein characterization data.   Partly consistent with gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly consistent with RNA expression data.   Mainly consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA062852

 

Antibody HPA065019

 

Antibody CAB004438

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
Single band differing more than +/-20% from predicted size in kDa and not supported by experimental and/or bioinformatic data.
  Uncertain

Analysis performed using a standard panel of samples.
No bands detected.
  Uncertain

Analysis performed using a standard panel of samples.
No bands detected.
 

     

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 220, 112, 84, 47, 32, 26, 16.8
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

30.7   30.7   30.7  

Antibody dilution

1:160   1:320   1:500  

PROTEIN ARRAY

 
 

Antibody HPA062852

 

Antibody HPA065019

 

Antibody CAB004438

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:1900   1:3850    

ANTIGEN INFORMATION

 
 

Antibody HPA062852

 

Antibody HPA065019

 

Antibody CAB004438

 

Antigen

Recombinant protein fragment   Recombinant protein fragment   Recombinant protein  

Length (aa)

77   60    

Antigen sequence

YATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMPAVNYAPLDLPG
SAEPPKQCHPCPGVPQGTSPAPVPYGY
 
GEPRHDSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQ
HPPDACAFRR
   

Matching transcripts

HOXB13-001 - ENSP00000290295 [100%]
  HOXB13-001 - ENSP00000290295 [100%]
   

Other gene match

     
ANTIGEN VIEW
HOXB13-001
 

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The Human Protein Atlas project is funded
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