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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA036705

 

Antibody CAB025834

 

Provider

Atlas Antibodies
Sigma-Aldrich
  R&D Systems
 

Product name

HPA036705   MAB4077  

Host species

Rabbit   Mouse  

Clonality

pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G  

Other gene match

   

Released in version

12   6  

References

   

VALIDATION SUMMARY

 
 

Antibody HPA036705

 

Antibody CAB025834

 
Immunohistochemistry

Supported  

Validated
 
Western blot

Uncertain   Uncertain  
Protein array

Approved    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA036705

 

Antibody CAB025834

 

Formal validation: Orthogonal

 
Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
 

 
 

 

 

Figure description

  Distribution of protein expression (antibody staining) and RNA expression (TPM) across 37 tissues.  
 

Standard validation

Supported   Supported  

   

Figure description

Immunohistochemical staining of human stomach shows strong cytoplasmic positivity in glandular cells.   Immunohistochemical staining of human stomach shows strong cytoplasmic positivity in glandular cells.  

Expression

RNA: detected in 12 tissues
Protein: detected in 7 cell types
  RNA: detected in 12 tissues
Protein: detected in 5 cell types
 

Retrieval

HIER pH6   HIER pH6  

Antibody dilution

1:900   1:500  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Mainly consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA036705

 

Antibody CAB025834

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
  Uncertain

Analysis performed using a standard panel of samples.
No bands detected.
 

   

Figure description

  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

14.3   14.3  

Antibody dilution

1:250   1:500  

PROTEIN ARRAY

 
 

Antibody HPA036705

 

Antibody CAB025834

 

Standard validation

Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
   

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:500    

ANTIGEN INFORMATION

 
 

Antibody HPA036705

 

Antibody CAB025834

 

Antigen

Recombinant protein fragment   Recombinant protein  

Length (aa)

83    

Antigen sequence

PHNRTNCGFPGITSDQCFDNGCCFDSSVTGVPWCFHPLPKQESDQCVMEV
SDRRNCGYPGISPEECASRKCCFSNFIFEVPWC
   

Matching transcripts

TFF2-001 - ENSP00000291526 [100%]
   

Other gene match

   
ANTIGEN VIEW
TFF2-001
 

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