We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
PCNT
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:7.3RPKM
FANTOM5:59.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA016820

 

Antibody HPA019887

 

Glial cells

Low   Not detected  

Neuronal cells

Medium   Low  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

7.3

GTEx sample id

RPKM

4.67.59.81.514.302468101214
 
4.67.59.81.514.302468101214

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 7.3
Samples: 117

Max RPKM: 14.3
Min RPKM: 1.5
Std RPKM: 3.2
Median RPKM: 7.5
GTEX-145MH-0011-R5a-SM-5P9JT 14.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 14.1
GTEX-WL46-0011-R5A-SM-3LK6V 14.1
GTEX-1399T-0011-R5b-SM-5IJDK 13.5
GTEX-13G51-0011-R5a-SM-5L3EB 13.1
GTEX-13O3O-0011-R5b-SM-5KM44 12.2
GTEX-1313W-0011-R5b-SM-5L3EP 12.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 12.0
GTEX-X585-0011-R5A-SM-46MVI 12.0
GTEX-T6MN-0011-R5A-SM-32QPD 11.8
GTEX-S7SE-0011-R5A-SM-2XCDA 11.6
GTEX-13X6J-0011-R5b-SM-5PNWT 11.5
GTEX-131YS-0011-R5b-SM-5K7YB 11.4
GTEX-14BIM-0011-R5b-SM-5S2RM 11.4
GTEX-WVLH-0011-R5A-SM-3MJFW 11.4
GTEX-QVJO-0011-R5A-SM-2S1QM 10.9
GTEX-WZTO-0011-R5B-SM-3NMC5 10.7
GTEX-Z93S-0011-R5b-SM-4RGNI 10.7
GTEX-13FXS-0011-R5b-SM-5LZYE 10.6
GTEX-145LS-0011-R5a-SM-5SI65 10.6
GTEX-WWYW-0011-R5A-SM-3NB3E 10.6
GTEX-13VXU-0011-R5a-SM-5O9D7 10.4
GTEX-N7MS-0011-R5a-SM-2HMK8 10.4
GTEX-11GSP-0011-R5a-SM-57WBE 10.3
GTEX-12WSF-0011-R5a-SM-5HL8K 10.3
GTEX-13OVL-0011-R5b-SM-5L3FU 10.3
GTEX-13SLX-0011-R5a-SM-5O9BV 10.2
GTEX-12WSC-0011-R5b-SM-5CVNS 10.0
GTEX-13FLW-0011-R5a-SM-5LZX6 9.8
GTEX-UTHO-0011-R5A-SM-3GIJD 9.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 9.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 9.6
GTEX-T2IS-0011-R5A-SM-32QP4 9.6
GTEX-13S7M-0011-R5b-SM-5P9HS 9.5
GTEX-N7MT-0011-R5a-SM-2I3G6 9.5
GTEX-P44H-0011-R5A-SM-2XCEX 9.5
GTEX-14ABY-0011-R5b-SM-5SI7B 9.4
GTEX-11OF3-0011-R5a-SM-57WB4 9.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 9.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 9.3
GTEX-T5JC-0011-R5A-SM-32PLK 9.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 9.1
GTEX-11NV4-0011-R5a-SM-5NQ88 9.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 9.0
GTEX-132Q8-0011-R5a-SM-5IJDM 8.9
GTEX-PVOW-0011-R5A-SM-32PL7 8.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 8.7
GTEX-13X6K-0011-R5b-SM-5PNUE 8.4
GTEX-13OW6-0011-R5a-SM-5O9BK 8.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 8.3
GTEX-R55E-0011-R5A-SM-2TC5N 8.1
GTEX-13JUV-0011-R5a-SM-5LZY5 8.0
GTEX-ZUA1-0011-R5b-SM-51MTG 8.0
GTEX-13NYB-0011-R5a-SM-5MR45 7.8
GTEX-13OW7-0011-R5b-SM-5O9DM 7.8
GTEX-TSE9-0011-R5A-SM-3DB7J 7.8
GTEX-11H98-0011-R5b-SM-57WCF 7.7
GTEX-13CZV-0011-R5a-SM-5K7XA 7.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 7.5
GTEX-13FLV-0011-R5a-SM-5LZWT 7.3
GTEX-13X6I-0011-R5a-SM-5PNWW 7.1
GTEX-12WSD-0011-R5b-SM-5CVNG 7.0
GTEX-RVPV-0011-R5A-SM-2TF69 6.8
GTEX-14BIN-0011-R5b-SM-5SI78 6.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 6.5
GTEX-13OW5-0011-R5b-SM-5L3FR 6.4
GTEX-RU72-0011-R5A-SM-2TF6U 6.4
GTEX-RVPU-0011-R5A-SM-2XCAD 6.4
GTEX-YFC4-0011-R5a-SM-4RGLR 6.4
GTEX-13NYS-0011-R5a-SM-5MR4D 6.3
GTEX-13OVH-0011-R5b-SM-5KM4L 6.3
GTEX-XMD1-0011-R5A-SM-4AT47 6.3
GTEX-OHPN-0011-R5A-SM-2I5FF 5.8
GTEX-X4XX-0011-R5A-SM-46MWN 5.8
GTEX-ZXG5-0011-R5b-SM-57WBN 5.8
GTEX-QMR6-0011-R5A-SM-32PKT 5.6
GTEX-XOTO-0011-R5A-SM-4B657 5.6
GTEX-ZE7O-0011-R5a-SM-57WBO 5.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 5.4
GTEX-139TT-0011-R5b-SM-5K7W8 5.4
GTEX-NL4W-0011-R5a-SM-2I3GD 5.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 5.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 5.1
GTEX-NL3H-0011-R5a-SM-2I3GB 5.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 5.0
GTEX-12ZZX-0011-R5a-SM-5HL89 4.9
GTEX-12WSB-0011-R5b-SM-5GU67 4.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 4.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 4.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 4.3
GTEX-144GL-0011-R5b-SM-5PNUJ 4.2
GTEX-144GO-0011-R5a-SM-5PNUR 4.2
GTEX-13CIG-0011-R5b-SM-5L3F2 4.0
GTEX-X261-0011-R5A-SM-3NMB4 4.0
GTEX-YJ89-0011-R5a-SM-4V6GM 3.9
GTEX-13FHP-0011-R5b-SM-5LZY2 3.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 3.7
GTEX-OXRN-0011-R5A-SM-2I5EF 3.7
GTEX-11WQC-0011-R5a-SM-5BC74 3.6
GTEX-13JVG-0011-R5a-SM-5MR4O 3.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 3.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 3.5
GTEX-139TS-0011-R5b-SM-5J2MZ 3.2
GTEX-12WSA-0011-R5b-SM-5GU5I 3.0
GTEX-13112-0011-R5b-SM-5DUV8 3.0
GTEX-ZV68-0011-R5a-SM-4YCDW 2.9
GTEX-ZVT3-0011-R5a-SM-51MSI 2.9
GTEX-1445S-0011-R5a-SM-5PNUS 2.7
GTEX-12WSH-0011-R5b-SM-5P9F3 2.6
GTEX-139T8-0011-R5b-SM-5J1MO 2.5
GTEX-NPJ7-0011-R5a-SM-33HBK 2.5
GTEX-11UD1-0011-R5b-SM-5P9FP 2.3
GTEX-1477Z-0011-R5b-SM-5PNUO 2.3
GTEX-13CF2-0011-R5a-SM-5LZWS 2.0
GTEX-S7PM-0011-R5A-SM-3NM8G 2.0
GTEX-145MG-0011-R5b-SM-5S2VU 1.8
GTEX-13NZA-0011-R5b-SM-5KM4K 1.5
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

59.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 59.0
FF:10164-103B2 76 years, female 64.5
FF:10379-105H1 89 years, female 53.4

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.