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Field

Term
Gene name

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External id

In atlas

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Reliability

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Method

Validation

Method

Validation

Method

Validation

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Cell type

Expression

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Specificity

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Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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TISSUE ATLAS PRIMARY DATA KIDNEY

GENE/PROTEIN

Antibody validation


Dictionary

Kidney

Tissue proteome

Kidney

KIDNEY - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:14.2TPM
GTEx:22.3RPKM
FANTOM5:24.1Tags Per Million

KIDNEY - Annotated protein expression

Annotated protein
expression

Cells in glomeruli:High
Cells in tubules:High
 

Antibody staining

Antibody HPA058265

 

Antibody CAB046486

 

Cells in glomeruli

High   High  

Cells in tubules

Medium   High  
   
   
   

KIDNEY - HPA RNA-seq

Average TPM

14.2

overview Female, age 58
Sample 1
TPM: 17.2
Cell types%
Cells in tubules: 60
Cells in glomeruli: 20
Fibroblasts: 5
Other cell types: 15
overview Female, age 67
Sample 2
TPM: 13.1
Cell types%
Cells in tubules: 70
Cells in glomeruli: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 55
Sample 3
TPM: 26.1
Cell types%
Cells in tubules: 80
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 5
overview Male, age 46
Sample 4
TPM: 14.1
Cell types%
Cells in tubules: 60
Cells in glomeruli: 25
Fibroblasts: 5
Other cell types: 10
overview Female, age 57
Sample 5
TPM: 7.9
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Male, age 78
Sample 6
TPM: 13.1
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 20
overview Male, age 73
Sample 7
TPM: 7.7
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Female, age 59
Sample 8
TPM: 18.0
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 15
overview Female, age 48
Sample 9
TPM: 11.0
Cell types%
Cells in tubules: 60
Cells in glomeruli: 5
Fibroblasts: 10
Other cell types: 25

KIDNEY - GTEx RNA-seq

Average RPKM

22.3

GTEx sample id

RPKM

 

Kidney - Cortex

Kidney - Cortex
RPKM: 22.3
Samples: 32

Max RPKM: 54.5
Min RPKM: 7.8
Std RPKM: 10.4
Median RPKM: 20.7
GTEX-RN64-1626-SM-48FD7 54.5
GTEX-12696-0926-SM-5FQTV 46.8
GTEX-13OVI-1126-SM-5KLZF 35.0
GTEX-13112-2126-SM-5GCO4 34.5
GTEX-ZYT6-2226-SM-5GIC9 32.1
GTEX-13OVL-1826-SM-5KLZR 30.0
GTEX-147F4-2626-SM-5Q5CS 28.4
GTEX-UPIC-1126-SM-4IHLO 28.4
GTEX-ZVZP-0926-SM-5GIDB 28.3
GTEX-11TTK-1926-SM-5PNW8 26.6
GTEX-1399S-0526-SM-5IJG8 25.1
GTEX-ZLFU-0926-SM-5P9F8 25.1
GTEX-XPVG-0526-SM-4B65N 24.6
GTEX-13O1R-2526-SM-5N9FW 23.6
GTEX-ZYFG-1626-SM-5GZYY 22.9
GTEX-12WSG-0826-SM-5EQ5A 22.0
GTEX-QLQW-1626-SM-4R1K1 19.3
GTEX-13RTJ-2226-SM-5S2Q1 19.2
GTEX-145MN-0326-SM-5QGQI 18.7
GTEX-11GS4-2326-SM-5A5KS 17.7
GTEX-1497J-0826-SM-5NQAJ 17.3
GTEX-T5JC-1526-SM-4DM68 15.9
GTEX-P4QS-1126-SM-3NMD5 14.6
GTEX-QDVN-1626-SM-48TZC 14.3
GTEX-13NYB-1726-SM-5N9G2 14.1
GTEX-ZC5H-1726-SM-5HL7X 13.3
GTEX-N7MS-1626-SM-3LK5F 12.0
GTEX-13OW6-1826-SM-5N9F9 12.0
GTEX-Y5V6-2026-SM-5IFHO 10.9
GTEX-11OF3-1326-SM-5N9FJ 10.3
GTEX-ZYFD-1526-SM-5NQ7T 9.5
GTEX-NPJ8-2226-SM-3TW8D 7.8
Show all

KIDNEY - FANTOM5 CAGE

Average Tags Per Million

24.1

FANTOM5 sample id

Sample description

Tags Per Million

Kidney
Tags Per Million: 24.1
FF:10017-101C8 60,62,63 years, female 24.1

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