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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA034796

 

Antibody HPA069867

 

Antibody CAB000154

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  DakoCytomation
 

Product name

HPA034796   HPA069867   M7106  

Host species

Rabbit   Rabbit   Mouse  

Clonality

pAb   pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Supernatant  

Other gene match

     

Released in version

13   16   16  

References

     

VALIDATION SUMMARY

 
 

Antibody HPA034796

 

Antibody HPA069867

 

Antibody CAB000154

 
Immunocytochemistry

  Approved    
Immunohistochemistry

Supported     Supported  
Western blot

Uncertain   Supported    
Protein array

Supported   Approved    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA034796

 

Antibody HPA069867

 

Antibody CAB000154

 

Standard validation

  Approved    

     

Figure description

  Immunofluorescent staining of human cell line U-2 OS shows localization to cell junctions.    

Antibody dilution

  1:85    

Literature conformity

  The subcellular location is partly supported by literature or no literature is available.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA034796

 

Antibody HPA069867

 

Antibody CAB000154

 

Standard validation

Supported     Supported  

     

Figure description

Immunohistochemical staining of human tonsil shows moderate positivity in a subset of cells in germinal centers.     Immunohistochemical staining of human spleen shows strong positivity in cells in white pulp.  

Expression

RNA: detected in 36 tissues
Protein: detected in 29 cell types
    RNA: detected in 36 tissues
Protein: detected in 8 cell types
 

Retrieval

HIER pH6     HIER pH6  

Antibody dilution

1:150     1:50  

Literature conformity

Consistent with extensive gene/protein characterization data.     Consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly consistent with RNA expression data.     Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA034796

 

Antibody HPA069867

 

Antibody CAB000154

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
   

     

Figure description

  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
   

Target mass (kDa)

81.3, 74.3   81.3, 74.3, 71.3, 59.2    

Antibody dilution

1:250   1:280    

PROTEIN ARRAY

 
 

Antibody HPA034796

 

Antibody HPA069867

 

Antibody CAB000154

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
   

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:3000   1:3400    

ANTIGEN INFORMATION

 
 

Antibody HPA034796

 

Antibody HPA069867

 

Antibody CAB000154

 

Antigen

Recombinant protein fragment   Recombinant protein fragment   Not known  

Length (aa)

87   77    

Antigen sequence

IGDSVMLTCSVMGCESPSFSWRTQIDSPLSGKVRSEGTNSTLTLSPVSFE
NEHSYLCTVTCGHKKLEKGIQVELYSFPRDPEIEMSG
 
ITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTF
TPVIEDIGKVLVCRAKLHIDEMDSVPT
   

Matching transcripts

VCAM1-001 - ENSP00000294728 [100%]
VCAM1-004 - ENSP00000359137 [100%]
  VCAM1-001 - ENSP00000294728 [100%]
VCAM1-002 - ENSP00000304611 [100%]
VCAM1-003 - ENSP00000359133 [100%]
VCAM1-004 - ENSP00000359137 [100%]
   

Other gene match

     
ANTIGEN VIEW
VCAM1-001
VCAM1-002
VCAM1-003
VCAM1-004
 

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.