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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:86.6RPKM
FANTOM5:115.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody HPA057236

 

Antibody CAB022549

 

Glial cells

Low   High  

Neuronal cells

Medium   High  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

86.6

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 86.6
Samples: 117

Max RPKM: 179.6
Min RPKM: 18.8
Std RPKM: 37.1
Median RPKM: 86.1
GTEX-X585-0011-R5A-SM-46MVI 179.6
GTEX-T2IS-0011-R5A-SM-32QP4 171.5
GTEX-ZUA1-0011-R5b-SM-51MTG 157.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 151.1
GTEX-14BIM-0011-R5b-SM-5S2RM 150.7
GTEX-1399T-0011-R5b-SM-5IJDK 147.8
GTEX-12WSC-0011-R5b-SM-5CVNS 145.5
GTEX-QVJO-0011-R5A-SM-2S1QM 145.3
GTEX-T5JC-0011-R5A-SM-32PLK 144.7
GTEX-13G51-0011-R5a-SM-5L3EB 142.5
GTEX-WWYW-0011-R5A-SM-3NB3E 140.6
GTEX-11OF3-0011-R5a-SM-57WB4 136.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 136.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 135.9
GTEX-13O3O-0011-R5b-SM-5KM44 135.5
GTEX-1313W-0011-R5b-SM-5L3EP 135.3
GTEX-131YS-0011-R5b-SM-5K7YB 135.2
GTEX-132Q8-0011-R5a-SM-5IJDM 134.9
GTEX-T6MN-0011-R5A-SM-32QPD 129.8
GTEX-P44H-0011-R5A-SM-2XCEX 128.8
GTEX-Z93S-0011-R5b-SM-4RGNI 125.1
GTEX-145MH-0011-R5a-SM-5P9JT 123.1
GTEX-TSE9-0011-R5A-SM-3DB7J 120.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 120.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 118.5
GTEX-S7SE-0011-R5A-SM-2XCDA 118.0
GTEX-WL46-0011-R5A-SM-3LK6V 117.6
GTEX-139TT-0011-R5b-SM-5K7W8 117.2
GTEX-N7MT-0011-R5a-SM-2I3G6 114.5
GTEX-UTHO-0011-R5A-SM-3GIJD 112.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 110.9
GTEX-R55E-0011-R5A-SM-2TC5N 109.4
GTEX-145LS-0011-R5a-SM-5SI65 108.2
GTEX-14ABY-0011-R5b-SM-5SI7B 106.8
GTEX-13NYS-0011-R5a-SM-5MR4D 106.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 105.9
GTEX-13X6J-0011-R5b-SM-5PNWT 105.2
GTEX-13VXU-0011-R5a-SM-5O9D7 104.3
GTEX-WVLH-0011-R5A-SM-3MJFW 104.2
GTEX-RU72-0011-R5A-SM-2TF6U 102.1
GTEX-11NV4-0011-R5a-SM-5NQ88 102.0
GTEX-13X6K-0011-R5b-SM-5PNUE 101.2
GTEX-13JUV-0011-R5a-SM-5LZY5 100.6
GTEX-WZTO-0011-R5B-SM-3NMC5 99.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 98.4
GTEX-11GSP-0011-R5a-SM-57WBE 98.1
GTEX-N7MS-0011-R5a-SM-2HMK8 98.1
GTEX-13X6I-0011-R5a-SM-5PNWW 97.9
GTEX-PVOW-0011-R5A-SM-32PL7 97.2
GTEX-13SLX-0011-R5a-SM-5O9BV 96.1
GTEX-11H98-0011-R5b-SM-57WCF 93.7
GTEX-12WSA-0011-R5b-SM-5GU5I 92.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 92.1
GTEX-12WSF-0011-R5a-SM-5HL8K 90.9
GTEX-13FXS-0011-R5b-SM-5LZYE 90.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 87.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 87.0
GTEX-13FLW-0011-R5a-SM-5LZX6 86.6
GTEX-12WSB-0011-R5b-SM-5GU67 86.1
GTEX-13CIG-0011-R5b-SM-5L3F2 83.1
GTEX-13CZV-0011-R5a-SM-5K7XA 81.1
GTEX-NL3H-0011-R5a-SM-2I3GB 80.9
GTEX-13NYB-0011-R5a-SM-5MR45 79.7
GTEX-13OW5-0011-R5b-SM-5L3FR 78.5
GTEX-OHPN-0011-R5A-SM-2I5FF 77.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 77.4
GTEX-XMD1-0011-R5A-SM-4AT47 76.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 74.8
GTEX-13FLV-0011-R5a-SM-5LZWT 73.5
GTEX-13OW6-0011-R5a-SM-5O9BK 73.4
GTEX-13OVL-0011-R5b-SM-5L3FU 73.1
GTEX-13OW7-0011-R5b-SM-5O9DM 72.3
GTEX-144GO-0011-R5a-SM-5PNUR 71.9
GTEX-X4XX-0011-R5A-SM-46MWN 70.8
GTEX-13S7M-0011-R5b-SM-5P9HS 69.7
GTEX-12WSD-0011-R5b-SM-5CVNG 69.5
GTEX-NL4W-0011-R5a-SM-2I3GD 68.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 68.1
GTEX-RVPU-0011-R5A-SM-2XCAD 67.8
GTEX-13OVH-0011-R5b-SM-5KM4L 65.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 65.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 65.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 64.8
GTEX-QMR6-0011-R5A-SM-32PKT 62.5
GTEX-RVPV-0011-R5A-SM-2TF69 61.9
GTEX-XOTO-0011-R5A-SM-4B657 58.7
GTEX-ZXG5-0011-R5b-SM-57WBN 58.6
GTEX-YFC4-0011-R5a-SM-4RGLR 58.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 57.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 56.6
GTEX-12ZZX-0011-R5a-SM-5HL89 56.4
GTEX-ZE7O-0011-R5a-SM-57WBO 56.2
GTEX-14BIN-0011-R5b-SM-5SI78 51.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50.5
GTEX-13JVG-0011-R5a-SM-5MR4O 49.6
GTEX-X261-0011-R5A-SM-3NMB4 48.8
GTEX-11WQC-0011-R5a-SM-5BC74 48.1
GTEX-OXRN-0011-R5A-SM-2I5EF 45.1
GTEX-NPJ7-0011-R5a-SM-33HBK 43.7
GTEX-ZVT3-0011-R5a-SM-51MSI 41.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 41.3
GTEX-YJ89-0011-R5a-SM-4V6GM 40.1
GTEX-139T8-0011-R5b-SM-5J1MO 39.7
GTEX-ZV68-0011-R5a-SM-4YCDW 39.5
GTEX-139TS-0011-R5b-SM-5J2MZ 37.4
GTEX-1445S-0011-R5a-SM-5PNUS 36.8
GTEX-12WSH-0011-R5b-SM-5P9F3 35.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 35.1
GTEX-13112-0011-R5b-SM-5DUV8 33.3
GTEX-144GL-0011-R5b-SM-5PNUJ 33.0
GTEX-1477Z-0011-R5b-SM-5PNUO 30.4
GTEX-11UD1-0011-R5b-SM-5P9FP 30.2
GTEX-S7PM-0011-R5A-SM-3NM8G 30.1
GTEX-13FHP-0011-R5b-SM-5LZY2 26.2
GTEX-13CF2-0011-R5a-SM-5LZWS 22.5
GTEX-145MG-0011-R5b-SM-5S2VU 20.8
GTEX-13NZA-0011-R5b-SM-5KM4K 18.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

115.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 115.3
FF:10379-105H1 89 years, female 128.3
FF:10164-103B2 76 years, female 102.4

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