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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:34.8RPKM
FANTOM5:214.5Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Medium
 

Antibody staining

Antibody HPA002645

 

Antibody HPA003230

 

Antibody CAB011199

 

Antibody CAB015181

 

Glial cells

Low   Not detected   Not detected   Medium  

Neuronal cells

Medium   Medium   Not detected   Medium  
       
       
       

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

34.8

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 34.8
Samples: 117

Max RPKM: 88.2
Min RPKM: 12.3
Std RPKM: 11.9
Median RPKM: 32.8
GTEX-WWYW-0011-R5A-SM-3NB3E 88.2
GTEX-X585-0011-R5A-SM-46MVI 67.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 66.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 61.9
GTEX-NL4W-0011-R5a-SM-2I3GD 59.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 59.0
GTEX-12WSF-0011-R5a-SM-5HL8K 58.9
GTEX-13JUV-0011-R5a-SM-5LZY5 58.5
GTEX-13NYS-0011-R5a-SM-5MR4D 54.6
GTEX-XMD1-0011-R5A-SM-4AT47 53.5
GTEX-13JVG-0011-R5a-SM-5MR4O 48.9
GTEX-132Q8-0011-R5a-SM-5IJDM 45.3
GTEX-131YS-0011-R5b-SM-5K7YB 45.2
GTEX-PVOW-0011-R5A-SM-32PL7 45.0
GTEX-P44H-0011-R5A-SM-2XCEX 44.9
GTEX-N7MT-0011-R5a-SM-2I3G6 44.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 44.1
GTEX-T2IS-0011-R5A-SM-32QP4 43.8
GTEX-13X6K-0011-R5b-SM-5PNUE 43.7
GTEX-13X6I-0011-R5a-SM-5PNWW 43.5
GTEX-WZTO-0011-R5B-SM-3NMC5 43.3
GTEX-NL3H-0011-R5a-SM-2I3GB 43.2
GTEX-N7MS-0011-R5a-SM-2HMK8 43.1
GTEX-UTHO-0011-R5A-SM-3GIJD 42.5
GTEX-S7SE-0011-R5A-SM-2XCDA 42.4
GTEX-X261-0011-R5A-SM-3NMB4 42.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 42.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 41.5
GTEX-1399T-0011-R5b-SM-5IJDK 41.2
GTEX-13G51-0011-R5a-SM-5L3EB 41.0
GTEX-TSE9-0011-R5A-SM-3DB7J 40.8
GTEX-11H98-0011-R5b-SM-57WCF 40.5
GTEX-12WSB-0011-R5b-SM-5GU67 40.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 39.9
GTEX-13OW6-0011-R5a-SM-5O9BK 39.5
GTEX-RU72-0011-R5A-SM-2TF6U 39.2
GTEX-X4XX-0011-R5A-SM-46MWN 38.8
GTEX-12WSA-0011-R5b-SM-5GU5I 38.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 38.2
GTEX-QMR6-0011-R5A-SM-32PKT 38.2
GTEX-11GSP-0011-R5a-SM-57WBE 38.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 37.7
GTEX-13FLV-0011-R5a-SM-5LZWT 37.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 37.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 36.7
GTEX-WL46-0011-R5A-SM-3LK6V 36.7
GTEX-145LS-0011-R5a-SM-5SI65 36.4
GTEX-QVJO-0011-R5A-SM-2S1QM 36.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 36.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 35.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 34.9
GTEX-WVLH-0011-R5A-SM-3MJFW 34.8
GTEX-T6MN-0011-R5A-SM-32QPD 34.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 34.5
GTEX-14BIM-0011-R5b-SM-5S2RM 34.4
GTEX-12WSC-0011-R5b-SM-5CVNS 33.8
GTEX-OHPN-0011-R5A-SM-2I5FF 33.4
GTEX-13OW5-0011-R5b-SM-5L3FR 33.2
GTEX-1313W-0011-R5b-SM-5L3EP 32.8
GTEX-13SLX-0011-R5a-SM-5O9BV 32.4
GTEX-13VXU-0011-R5a-SM-5O9D7 32.3
GTEX-R55E-0011-R5A-SM-2TC5N 31.8
GTEX-144GO-0011-R5a-SM-5PNUR 31.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 31.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 31.2
GTEX-RVPV-0011-R5A-SM-2TF69 31.2
GTEX-139TS-0011-R5b-SM-5J2MZ 31.1
GTEX-YFC4-0011-R5a-SM-4RGLR 31.1
GTEX-13X6J-0011-R5b-SM-5PNWT 30.8
GTEX-13O3O-0011-R5b-SM-5KM44 30.6
GTEX-ZUA1-0011-R5b-SM-51MTG 30.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 30.5
GTEX-T5JC-0011-R5A-SM-32PLK 30.4
GTEX-ZE7O-0011-R5a-SM-57WBO 30.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 29.9
GTEX-14ABY-0011-R5b-SM-5SI7B 29.8
GTEX-ZV68-0011-R5a-SM-4YCDW 29.6
GTEX-13NYB-0011-R5a-SM-5MR45 29.5
GTEX-1445S-0011-R5a-SM-5PNUS 29.2
GTEX-11OF3-0011-R5a-SM-57WB4 28.9
GTEX-11NV4-0011-R5a-SM-5NQ88 28.8
GTEX-145MH-0011-R5a-SM-5P9JT 28.7
GTEX-13FXS-0011-R5b-SM-5LZYE 28.6
GTEX-14BIN-0011-R5b-SM-5SI78 28.6
GTEX-13OVL-0011-R5b-SM-5L3FU 28.3
GTEX-Z93S-0011-R5b-SM-4RGNI 28.2
GTEX-12WSD-0011-R5b-SM-5CVNG 28.0
GTEX-13OVH-0011-R5b-SM-5KM4L 28.0
GTEX-XOTO-0011-R5A-SM-4B657 26.9
GTEX-ZXG5-0011-R5b-SM-57WBN 26.7
GTEX-12ZZX-0011-R5a-SM-5HL89 26.4
GTEX-13OW7-0011-R5b-SM-5O9DM 26.3
GTEX-13FLW-0011-R5a-SM-5LZX6 26.2
GTEX-11WQC-0011-R5a-SM-5BC74 26.1
GTEX-139TT-0011-R5b-SM-5K7W8 25.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 25.4
GTEX-13CIG-0011-R5b-SM-5L3F2 25.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 24.8
GTEX-NPJ7-0011-R5a-SM-33HBK 24.4
GTEX-RVPU-0011-R5A-SM-2XCAD 24.4
GTEX-13CZV-0011-R5a-SM-5K7XA 23.9
GTEX-144GL-0011-R5b-SM-5PNUJ 23.4
GTEX-139T8-0011-R5b-SM-5J1MO 23.0
GTEX-ZVT3-0011-R5a-SM-51MSI 23.0
GTEX-12WSH-0011-R5b-SM-5P9F3 22.5
GTEX-13112-0011-R5b-SM-5DUV8 22.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 21.7
GTEX-13S7M-0011-R5b-SM-5P9HS 21.1
GTEX-11UD1-0011-R5b-SM-5P9FP 19.3
GTEX-13CF2-0011-R5a-SM-5LZWS 18.6
GTEX-S7PM-0011-R5A-SM-3NM8G 17.8
GTEX-OXRN-0011-R5A-SM-2I5EF 17.5
GTEX-1477Z-0011-R5b-SM-5PNUO 17.2
GTEX-13FHP-0011-R5b-SM-5LZY2 16.5
GTEX-13NZA-0011-R5b-SM-5KM4K 12.8
GTEX-145MG-0011-R5b-SM-5S2VU 12.3
GTEX-YJ89-0011-R5a-SM-4V6GM 12.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

214.5

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 214.5
FF:10164-103B2 76 years, female 231.9
FF:10379-105H1 89 years, female 197.1

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