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Field

Term
Gene name

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Chromosome

External id

In atlas

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Validation

Method

Validation

Method

Validation

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Expression

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Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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TISSUE ATLAS PRIMARY DATA URINARY BLADDER

GENE/PROTEIN

Antibody validation


Dictionary

Urinary bladder

URINARY BLADDER - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:31.4TPM
GTEx:17.2RPKM
FANTOM5:42.2Tags Per Million

URINARY BLADDER - Annotated protein expression

Annotated protein
expression

Urothelial cells:Medium
 

Antibody staining

Antibody HPA011088

 

Antibody HPA012123

 

Antibody CAB037128

 

Antibody CAB037288

 

Urothelial cells

High   Medium   High   High  
       
       
       

URINARY BLADDER - HPA RNA-seq

Average TPM

31.4

overview Male, age 74
Sample 1
TPM: 38.5
Cell types%
Urothelial cells: 5
Smooth muscle cells: 60
Fibroblasts: 20
Endothelial cells: 10
Other cell types: 5
overview Male, age 80
Sample 2
TPM: 24.3
Cell types%
Urothelial cells: 10
Smooth muscle cells: 45
Fibroblasts: 15
Endothelial cells: 10
Other cell types: 20

URINARY BLADDER - GTEx RNA-seq

Average RPKM

17.2

GTEx sample id

RPKM

15.317.119.014.322.50246810121416182022
 
15.317.119.014.322.50246810121416182022

Bladder

Bladder
RPKM: 17.2
Samples: 11

Max RPKM: 22.5
Min RPKM: 14.3
Std RPKM: 2.4
Median RPKM: 17.1
GTEX-TMMY-1526-SM-4DXST 22.5
GTEX-S4Q7-0926-SM-4AD5D 19.4
GTEX-S32W-1126-SM-4AD5V 19.2
GTEX-U4B1-1226-SM-4DXT7 18.9
GTEX-S3XE-1226-SM-4AD4L 17.3
GTEX-S4UY-0926-SM-4AD6O 17.1
GTEX-SE5C-1026-SM-4BRUG 15.6
GTEX-U3ZN-1226-SM-4DXUD 15.4
GTEX-SNMC-0826-SM-4DM66 15.1
GTEX-U3ZM-0826-SM-4DXU6 14.4
GTEX-SNOS-0526-SM-4DM54 14.3
Show all

URINARY BLADDER - FANTOM5 CAGE

Average Tags Per Million

42.2

FANTOM5 sample id

Sample description

Tags Per Million

Bladder
Tags Per Million: 42.2
FF:10011-101C2 55,58,79 years, mixed 42.2

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