Tissue expression of TTC39C - Summary - The Human Protein Atlas

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TTC39C

TISSUE

CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	TTC39C
Gene description	Tetratricopeptide repeat domain 39C
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	6
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Tissue enhanced (liver)
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General nuclear expression.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data. Pending external verification.
Reliability score	Approved based on 1 antibody. HPA065713
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (liver)
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	TTC39C (HGNC Symbol)
Synonyms	C18orf17, FLJ33761, HsT2697
Description	Tetratricopeptide repeat domain 39C (HGNC Symbol)
Entrez gene summary
Chromosome	18
Cytoband	q11.2
Chromosome location (bp)	23992773 - 24135610
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000168234 (version 83.38)
Entrez gene	125488
UniProt	Q8N584 (UniProt - Evidence at transcript level)
neXtProt	NX_Q8N584
Antibodypedia	TTC39C antibodies

PROTEIN BROWSER

TTC39C-001	TTC39C-002	TTC39C-004	TTC39C-006	TTC39C-007	TTC39C-011

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
TTC39C-001 ENSP00000323645 ENST00000317571	Q8N584 [Direct mapping] Tetratricopeptide repeat protein 39C Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all		583 aa 65.9 kDa	No	2
TTC39C-002 ENSP00000306598 ENST00000304621	Q8N584 [Direct mapping] Tetratricopeptide repeat protein 39C Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all		522 aa 59.2 kDa	No	2
TTC39C-004 ENSP00000464344 ENST00000584250	Q8N584 [Direct mapping] Tetratricopeptide repeat protein 39C Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		76 aa 8.4 kDa	No	0
TTC39C-006 ENSP00000443016 ENST00000540918	G3V1P2 [Direct mapping] Chromosome 18 open reading frame 17, isoform CRA_c; Tetratricopeptide repeat protein 39C Show all	MEMSAT3 predicted membrane proteins THUMBUP predicted membrane proteins SignalP predicted secreted proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		276 aa 31.8 kDa	No	0
TTC39C-007 ENSP00000463283 ENST00000579214	J3QKX7 [Direct mapping] Tetratricopeptide repeat protein 39C Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		67 aa 7.8 kDa	No	0
TTC39C-011 ENSP00000463610 ENST00000577185	J3QLL8 [Direct mapping] Tetratricopeptide repeat protein 39C Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		43 aa 4.8 kDa	No	0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.