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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:30.7TPM
GTEx:12.4RPKM
FANTOM5:37.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA041978

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

30.7
overview Male, age 54
Sample 1
TPM: 22.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 26.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 34.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 41.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 12.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 31.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 40.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 31.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 22.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 40.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 28.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 38.0
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 29.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.4

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 9.9
Samples: 149

Max RPKM: 20.7
Min RPKM: 3.8
Std RPKM: 2.5
Median RPKM: 9.7
GTEX-148VJ-2426-SM-5NQ9Y 20.7
GTEX-14E6C-2226-SM-5QGQG 19.7
GTEX-Y9LG-1326-SM-4VBQB 17.5
GTEX-11WQK-2526-SM-5CVL8 16.3
GTEX-ZT9W-1726-SM-51MS3 15.5
GTEX-X4EO-2726-SM-4E3HS 14.7
GTEX-13QBU-2026-SM-5KLZB 14.4
GTEX-14E6E-1726-SM-5S2R6 14.4
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 14.4
Samples: 196

Max RPKM: 32.6
Min RPKM: 5.3
Std RPKM: 5.1
Median RPKM: 13.8
GTEX-ZT9W-1826-SM-51MQX 32.6
GTEX-11P82-1026-SM-5BC5J 31.6
GTEX-ZYWO-1626-SM-5E44H 31.0
GTEX-PLZ5-1126-SM-3P613 29.3
GTEX-ZF2S-1926-SM-4WWAN 26.2
GTEX-131XG-1826-SM-5LZV4 25.6
GTEX-Q2AI-0926-SM-48U1F 24.9
GTEX-U4B1-1126-SM-4DXV3 24.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

37.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 37.7
FF:10014-101C5 62,83,84 years, mixed 37.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.