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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:232.7TPM
GTEx:44.0RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Not detected
Neuronal cells:Low
Neuropil:Medium
 

Antibody staining

Antibody HPA011893

 

Antibody CAB002519

 

Endothelial cells

Not detected   Not detected  

Glial cells

Not detected   Low  

Neuronal cells

Low   Low  

Neuropil

Medium   Medium  
   
   
   

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

232.7

N/A Male, age 5
Sample 1
TPM: 280.9
overview Female, age 40
Sample 2
TPM: 88.2
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 329.0
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

44.0

GTEx sample id

RPKM

20.029.039.63.264.9020406080100120140160
 
20.029.039.63.264.9020406080100120140160

Brain - Cortex

Brain - Cortex
RPKM: 32.3
Samples: 114

Max RPKM: 173.2
Min RPKM: 3.2
Std RPKM: 19.8
Median RPKM: 29
GTEX-11OC5-0726-SM-5P9JK 173.2
GTEX-TSE9-3026-SM-3DB76 86.7
GTEX-WHSE-3026-SM-3P5ZH 64.9
GTEX-PVOW-2526-SM-2XCF7 64.8
GTEX-13NYC-2826-SM-5K7WR 64.6
GTEX-13SLX-3126-SM-5S2Q5 58.2
GTEX-11NUK-2926-SM-5A5MD 57.8
GTEX-11WQK-3026-SM-5EQL6 57.3
GTEX-131YS-3126-SM-5KLYT 56.1
GTEX-WZTO-2926-SM-3NM9I 53.8
GTEX-T2IS-3026-SM-32QPM 50.0
GTEX-WVLH-3026-SM-3MJG9 50.0
GTEX-X585-3026-SM-46MWF 49.5
GTEX-ZUA1-3026-SM-59HJC 48.7
GTEX-117XS-3026-SM-5N9CA 48.5
GTEX-145MH-3026-SM-5Q5DZ 47.9
GTEX-144FL-3026-SM-5O99C 46.9
GTEX-WL46-2926-SM-3LK82 46.6
GTEX-12ZZX-2926-SM-5GCOQ 46.2
GTEX-14BMV-3026-SM-5S2PQ 45.1
GTEX-ZYFD-3026-SM-5E44C 44.8
GTEX-XOTO-3026-SM-4B65M 43.8
GTEX-12WSC-3026-SM-5GCNF 42.9
GTEX-11PRG-2926-SM-5987A 41.9
GTEX-13PVQ-3026-SM-5SI93 41.6
GTEX-RNOR-2326-SM-2TF4I 41.0
GTEX-13OVH-3026-SM-5MR4N 40.0
GTEX-Z93S-2926-SM-57WB9 39.9
GTEX-11ZUS-2926-SM-5FQSL 39.7
GTEX-T5JC-2426-SM-3NMDB 39.4
GTEX-Y111-2726-SM-4TT3N 39.4
GTEX-Y8DK-0826-SM-4TT3T 39.3
GTEX-ZAK1-3026-SM-5S2MJ 39.3
GTEX-13OW6-3026-SM-5J2MI 37.6
GTEX-13JUV-2926-SM-5LZX7 37.5
GTEX-13PL6-3126-SM-5LUAR 37.4
GTEX-11DXY-3226-SM-5GIDE 37.3
GTEX-14ASI-3026-SM-5S2PN 36.9
GTEX-12ZZZ-3026-SM-5BC67 36.6
GTEX-145LS-3126-SM-5Q5BY 36.6
GTEX-YFC4-3126-SM-5PNV6 36.0
GTEX-12126-1026-SM-5P9JJ 35.9
GTEX-T6MN-2626-SM-32PMQ 35.8
GTEX-13OVJ-2826-SM-5L3GW 35.2
GTEX-111FC-3126-SM-5GZZ2 34.8
GTEX-13FXS-3126-SM-5J2NN 34.3
GTEX-145MG-3026-SM-5RQJA 34.1
GTEX-WWYW-3126-SM-3NB39 34.0
GTEX-13VXU-2926-SM-5LU5C 33.3
GTEX-11ONC-2926-SM-5P9JM 32.3
GTEX-145MF-2726-SM-5O995 32.3
GTEX-ZE7O-3126-SM-5HL5X 31.4
GTEX-QMR6-1426-SM-32PLA 31.3
GTEX-13QIC-2926-SM-5J2NF 31.1
GTEX-1313W-3126-SM-5LZUI 30.7
GTEX-11GSP-3226-SM-5986O 30.3
GTEX-YJ89-3026-SM-5IFJI 29.1
GTEX-13O3O-3126-SM-5KM3H 28.9
GTEX-11O72-2926-SM-5BC4V 28.6
GTEX-1399T-3026-SM-5KLZC 28.3
GTEX-144GL-3026-SM-5Q5CW 28.1
GTEX-13X6K-2926-SM-5Q5D5 28.0
GTEX-X4XX-3026-SM-3NMB2 28.0
GTEX-OXRN-2426-SM-2I5EQ 27.9
GTEX-13OW8-2826-SM-5L3GC 27.4
GTEX-1128S-2726-SM-5H12C 27.3
GTEX-12ZZY-3026-SM-5GCOU 27.3
GTEX-13FLW-1426-SM-5K7YE 27.2
GTEX-11GSO-2926-SM-5HL73 27.1
GTEX-13O3Q-2926-SM-5KM45 27.0
GTEX-12WSH-3026-SM-5CVNI 26.3
GTEX-13FHP-3026-SM-5IJBS 26.3
GTEX-14A5I-2926-SM-5Q5CQ 26.3
GTEX-ZVT3-3026-SM-5E43N 26.2
GTEX-11EMC-3226-SM-5EGKW 26.0
GTEX-13X6J-3026-SM-5Q5CU 25.9
GTEX-13FHO-3026-SM-5J1O9 24.8
GTEX-13NYB-3026-SM-5IJD7 24.6
GTEX-11EI6-3026-SM-5GZZO 24.2
GTEX-RU72-3026-SM-5SI7Y 24.2
GTEX-R55F-1326-SM-5S2V4 22.8
GTEX-12WSD-3126-SM-5HL7P 22.6
GTEX-UTHO-3026-SM-3GAFB 22.3
GTEX-11DXW-1126-SM-5H12Q 22.2
GTEX-Q2AG-2926-SM-2HMJ3 21.7
GTEX-13JVG-3126-SM-5L3FH 19.4
GTEX-QVJO-1426-SM-2S1QY 19.4
GTEX-132Q8-3026-SM-5PNVG 19.3
GTEX-131XW-3126-SM-5LZUC 18.8
GTEX-11GS4-3126-SM-5A5LH 18.7
GTEX-XLM4-3026-SM-4AT6L 18.6
GTEX-13NYS-3126-SM-5KLYV 18.2
GTEX-13S7M-3126-SM-5RQJQ 17.9
GTEX-13OW7-3026-SM-5L3GY 16.9
GTEX-12ZZW-2926-SM-5LZUP 15.3
GTEX-1192X-3126-SM-5N9BY 15.2
GTEX-QDT8-2926-SM-32PKC 15.2
GTEX-11OF3-2926-SM-5HL78 14.7
GTEX-ZAJG-3126-SM-5HL9J 14.7
GTEX-139T8-1026-SM-5J2MC 13.7
GTEX-11NV4-2126-SM-5N9DS 13.4
GTEX-NPJ7-2726-SM-2I3FT 12.7
GTEX-NPJ8-1526-SM-2D7VU 12.4
GTEX-147GR-3026-SM-5S2ML 11.5
GTEX-QVUS-2826-SM-3GADB 11.3
GTEX-N7MT-1126-SM-5SI7V 10.9
GTEX-13G51-3026-SM-5IJB8 10.8
GTEX-ZZPT-3026-SM-5GZXH 9.1
GTEX-13IVO-2926-SM-5L3CZ 8.7
GTEX-11TTK-2926-SM-5PNYP 7.5
GTEX-1445S-3026-SM-5O9BR 5.8
GTEX-1117F-3226-SM-5N9CT 5.7
GTEX-PWO3-0926-SM-2I5EY 5.4
GTEX-12WSA-2926-SM-5EQ4D 3.2
Show all
36.857.874.85.8113.7020406080100120140160180
 
36.857.874.85.8113.7020406080100120140160180

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 56.4
Samples: 108

Max RPKM: 195.7
Min RPKM: 5.8
Std RPKM: 29.5
Median RPKM: 57.7
GTEX-13QJC-0011-R10a-SM-5SI63 195.7
GTEX-13N2G-0011-R10a-SM-5MR34 113.7
GTEX-12ZZX-0011-R10b-SM-5DUWK 112.4
GTEX-WL46-0011-R10A-SM-3MJFQ 109.0
GTEX-12ZZY-0011-R10b-SM-5HL7W 105.2
GTEX-WVLH-0011-R10A-SM-3MJFM 104.1
GTEX-S7SE-0011-R10A-SM-2XCDF 103.1
GTEX-12126-0011-R10b-SM-5BC6T 98.5
GTEX-12WSE-0011-R10b-SM-5P9JV 95.9
GTEX-Z93S-0011-R10a-SM-4RGNM 93.3
GTEX-13N1W-0011-R10b-SM-5MR4H 90.3
GTEX-131YS-0011-R10b-SM-5EQ5N 88.5
GTEX-T6MN-0011-R10A-SM-32QP7 88.4
GTEX-WZTO-0011-R10B-SM-4E3KB 87.7
GTEX-145MH-0011-R10b-SM-5PNUK 83.6
GTEX-YFC4-0011-R10a-SM-4SOK5 82.8
GTEX-T5JC-0011-R10A-SM-32PM2 81.7
GTEX-13QIC-0011-R10a-SM-5O9C7 81.4
GTEX-Q2AG-0011-R10A-SM-2HMLA 80.2
GTEX-1313W-0011-R10b-SM-5DUXA 79.7
GTEX-131XH-0011-R10a-SM-5EGLJ 78.5
GTEX-145MG-0011-R10a-SM-5PNWG 77.8
GTEX-13SLX-0011-R10a-SM-5P9HV 76.8
GTEX-TSE9-0011-R10A-SM-3DB7O 76.1
GTEX-14ASI-0011-R10b-SM-5S2VZ 75.7
GTEX-12WSF-0011-R10a-SM-5LZVH 75.5
GTEX-QVUS-0011-R10A-SM-3GIK3 75.5
GTEX-12WSC-0011-R10a-SM-5GU57 74.5
GTEX-14BIN-0011-R10a-SM-5S2UA 73.8
GTEX-147GR-0011-R10b-SM-5S2UM 72.4
GTEX-12WSM-0011-R10a-SM-5DUWV 72.3
GTEX-Y8DK-0011-R10A-SM-4SOK1 70.8
GTEX-12ZZZ-0011-R10a-SM-5P9HC 70.5
GTEX-13OW6-0011-R10a-SM-5L3HE 70.0
GTEX-13OVL-0011-R10a-SM-5L3GS 69.9
GTEX-13X6J-0011-R10b-SM-5PNWA 68.1
GTEX-ZUA1-0011-R10a-SM-51MT6 67.1
GTEX-13O3O-0011-R10a-SM-5LUA9 66.6
GTEX-13S7M-0011-R10b-SM-5PNZB 66.6
GTEX-13FLW-0011-R10b-SM-5LZZF 65.7
GTEX-WWYW-0011-R10A-SM-3NB35 65.7
GTEX-13OVJ-0011-R10b-SM-5L3HT 65.2
GTEX-11WQK-0011-R10a-SM-5BC6R 64.8
GTEX-13O3Q-0011-R10b-SM-5KM39 64.3
GTEX-13NYB-0011-R10a-SM-5KM43 63.8
GTEX-YJ89-0011-R10a-SM-4SOK9 63.8
GTEX-13OW7-0011-R10a-SM-5L3H3 63.3
GTEX-ZVZQ-0011-R10b-SM-51MRT 61.3
GTEX-13RTJ-0011-R10b-SM-5O9CW 61.0
GTEX-13FXS-0011-R10a-SM-5J2MA 60.7
GTEX-X4EP-0011-R10B-SM-4QASJ 60.1
GTEX-N7MS-0011-R10A-SM-2HMJK 58.5
GTEX-13FLV-0011-R10b-SM-5LZZ2 57.9
GTEX-NL3H-0011-R10A-SM-2I3E9 57.8
GTEX-X261-0011-R10B-SM-4E3JT 57.7
GTEX-11H98-0011-R10b-SM-5NQ98 56.2
GTEX-13G51-0011-R10b-SM-5LZYF 54.0
GTEX-13CZV-0011-R10b-SM-5LZYD 53.1
GTEX-X585-0011-R10A-SM-46MUY 52.7
GTEX-QMR6-0011-R10A-SM-32PKO 51.5
GTEX-13X6K-0011-R10a-SM-5P9JR 51.2
GTEX-145LU-0011-R10a-SM-5PNWJ 50.7
GTEX-12WSH-0011-R10a-SM-5LZUS 49.5
GTEX-ZDXO-0011-R10a-SM-4WWD8 48.4
GTEX-X4XX-0011-R10B-SM-46MWO 48.3
GTEX-145LS-0011-R10a-SM-5PNUQ 45.9
GTEX-N7MT-0011-R10A-SM-2I3E1 45.6
GTEX-13NZA-0011-R10b-SM-5KM54 45.3
GTEX-QDT8-0011-R10A-SM-32PKG 45.0
GTEX-14BIL-0011-R10a-SM-5SI75 44.5
GTEX-11ZUS-0011-R10b-SM-5BC79 42.3
GTEX-P44H-0011-R10A-SM-2XCEK 42.3
GTEX-13FHO-0011-R10b-SM-5J2MM 41.7
GTEX-13OW8-0011-R10a-SM-5L3H6 41.0
GTEX-NPJ7-0011-R10A-SM-2I3E5 41.0
GTEX-ZVT3-0011-R10b-SM-57WB6 38.9
GTEX-OXRN-0011-R10A-SM-2I5GC 38.2
GTEX-13JUV-0011-R10b-SM-5LZXR 37.5
GTEX-147F4-0011-R10b-SM-5S2WC 37.1
GTEX-13FTZ-0011-R10b-SM-5KLZS 36.9
GTEX-13X6I-0011-R10a-SM-5PNWI 36.9
GTEX-ZF28-0011-R10a-SM-4WWEH 36.5
GTEX-ZAB4-0011-R10a-SM-4SOKH 35.0
GTEX-139TS-0011-R10a-SM-5K7TU 33.4
GTEX-QVJO-0011-R10A-SM-2S1QJ 31.8
GTEX-XLM4-0011-R10A-SM-4AT5P 31.6
GTEX-12WSD-0011-R10b-SM-5GU79 31.2
GTEX-132Q8-0011-R10b-SM-5DUWZ 30.2
GTEX-NPJ8-0011-R10A-SM-2YUMO 28.5
GTEX-11WQC-0011-R10a-SM-57WCT 26.2
GTEX-13NYS-0011-R10a-SM-5MR4S 25.5
GTEX-RVPU-0011-R10A-SM-2XCAH 25.4
GTEX-OXRO-0011-R10A-SM-2I5EH 25.0
GTEX-11GSP-0011-R10a-SM-5NQ7J 24.1
GTEX-ZXG5-0011-R10a-SM-57WDD 23.6
GTEX-13JVG-0011-R10b-SM-5KM2P 23.2
GTEX-NL4W-0011-R10A-SM-2I3DY 21.4
GTEX-XMD1-0011-R10A-SM-4AT4A 17.4
GTEX-ZE7O-0011-R10a-SM-57WAZ 16.0
GTEX-12ZZW-0011-R10b-SM-5HL9X 14.2
GTEX-14753-0011-R10b-SM-5S2WE 12.6
GTEX-13SLW-0011-R10a-SM-5S2UI 12.5
GTEX-1477Z-0011-R10b-SM-5S2RF 8.5
GTEX-13IVO-0011-R10a-SM-5LZY3 7.9
GTEX-ZV68-0011-R10a-SM-51MT7 6.9
GTEX-12WSA-0011-R10b-SM-5P9ET 6.5
GTEX-131XW-0011-R10a-SM-5DUVA 6.1
GTEX-1445S-0011-R10a-SM-5PNWB 5.8
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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