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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:12.9RPKM
FANTOM5:38.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA036986

 

Antibody HPA036987

 

Glial cells

Not detected   Low  

Neuronal cells

High   High  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

12.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 12.9
Samples: 117

Max RPKM: 22
Min RPKM: 5.7
Std RPKM: 2.9
Median RPKM: 13.1
GTEX-132Q8-0011-R5a-SM-5IJDM 22.0
GTEX-OHPN-0011-R5A-SM-2I5FF 21.9
GTEX-X585-0011-R5A-SM-46MVI 19.9
GTEX-QVJO-0011-R5A-SM-2S1QM 18.5
GTEX-1399T-0011-R5b-SM-5IJDK 17.7
GTEX-XMD1-0011-R5A-SM-4AT47 17.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 17.0
GTEX-QMR6-0011-R5A-SM-32PKT 16.9
GTEX-P44H-0011-R5A-SM-2XCEX 16.8
GTEX-13OW6-0011-R5a-SM-5O9BK 16.5
GTEX-WL46-0011-R5A-SM-3LK6V 16.4
GTEX-13JUV-0011-R5a-SM-5LZY5 16.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 16.2
GTEX-R55E-0011-R5A-SM-2TC5N 16.1
GTEX-WVLH-0011-R5A-SM-3MJFW 15.9
GTEX-13G51-0011-R5a-SM-5L3EB 15.8
GTEX-N7MT-0011-R5a-SM-2I3G6 15.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 15.7
GTEX-13X6K-0011-R5b-SM-5PNUE 15.7
GTEX-N7MS-0011-R5a-SM-2HMK8 15.5
GTEX-WZTO-0011-R5B-SM-3NMC5 15.5
GTEX-13FLV-0011-R5a-SM-5LZWT 15.3
GTEX-RVPU-0011-R5A-SM-2XCAD 15.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 15.0
GTEX-13NYB-0011-R5a-SM-5MR45 14.9
GTEX-13X6I-0011-R5a-SM-5PNWW 14.9
GTEX-RVPV-0011-R5A-SM-2TF69 14.8
GTEX-UTHO-0011-R5A-SM-3GIJD 14.8
GTEX-12WSA-0011-R5b-SM-5GU5I 14.6
GTEX-12WSB-0011-R5b-SM-5GU67 14.6
GTEX-144GO-0011-R5a-SM-5PNUR 14.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 14.6
GTEX-11GSP-0011-R5a-SM-57WBE 14.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 14.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 14.4
GTEX-13OVL-0011-R5b-SM-5L3FU 14.4
GTEX-ZUA1-0011-R5b-SM-51MTG 14.3
GTEX-14BIM-0011-R5b-SM-5S2RM 14.2
GTEX-131YS-0011-R5b-SM-5K7YB 14.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 14.0
GTEX-13FLW-0011-R5a-SM-5LZX6 14.0
GTEX-13FXS-0011-R5b-SM-5LZYE 14.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 14.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 13.8
GTEX-13VXU-0011-R5a-SM-5O9D7 13.8
GTEX-11NV4-0011-R5a-SM-5NQ88 13.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 13.6
GTEX-S7SE-0011-R5A-SM-2XCDA 13.5
GTEX-12WSC-0011-R5b-SM-5CVNS 13.4
GTEX-ZE7O-0011-R5a-SM-57WBO 13.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 13.3
GTEX-13S7M-0011-R5b-SM-5P9HS 13.3
GTEX-YFC4-0011-R5a-SM-4RGLR 13.3
GTEX-12ZZX-0011-R5a-SM-5HL89 13.2
GTEX-RU72-0011-R5A-SM-2TF6U 13.2
GTEX-XOTO-0011-R5A-SM-4B657 13.2
GTEX-11H98-0011-R5b-SM-57WCF 13.1
GTEX-13OW7-0011-R5b-SM-5O9DM 13.1
GTEX-T6MN-0011-R5A-SM-32QPD 13.1
GTEX-145MH-0011-R5a-SM-5P9JT 13.0
GTEX-14ABY-0011-R5b-SM-5SI7B 12.9
GTEX-139TS-0011-R5b-SM-5J2MZ 12.8
GTEX-13SLX-0011-R5a-SM-5O9BV 12.7
GTEX-T5JC-0011-R5A-SM-32PLK 12.7
GTEX-X4XX-0011-R5A-SM-46MWN 12.7
GTEX-11OF3-0011-R5a-SM-57WB4 12.6
GTEX-13OW5-0011-R5b-SM-5L3FR 12.6
GTEX-Z93S-0011-R5b-SM-4RGNI 12.5
GTEX-1313W-0011-R5b-SM-5L3EP 12.4
GTEX-13O3O-0011-R5b-SM-5KM44 12.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 12.3
GTEX-X261-0011-R5A-SM-3NMB4 12.3
GTEX-13OVH-0011-R5b-SM-5KM4L 12.2
GTEX-13X6J-0011-R5b-SM-5PNWT 12.2
GTEX-PVOW-0011-R5A-SM-32PL7 12.2
GTEX-TSE9-0011-R5A-SM-3DB7J 12.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 12.1
GTEX-144GL-0011-R5b-SM-5PNUJ 12.0
GTEX-12WSF-0011-R5a-SM-5HL8K 11.9
GTEX-13CZV-0011-R5a-SM-5K7XA 11.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 11.8
GTEX-145LS-0011-R5a-SM-5SI65 11.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 11.6
GTEX-12WSD-0011-R5b-SM-5CVNG 11.5
GTEX-13NYS-0011-R5a-SM-5MR4D 11.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 11.3
GTEX-14BIN-0011-R5b-SM-5SI78 11.3
GTEX-NPJ7-0011-R5a-SM-33HBK 11.1
GTEX-ZVT3-0011-R5a-SM-51MSI 11.1
GTEX-ZXG5-0011-R5b-SM-57WBN 11.1
GTEX-NL4W-0011-R5a-SM-2I3GD 10.9
GTEX-WWYW-0011-R5A-SM-3NB3E 10.8
GTEX-139TT-0011-R5b-SM-5K7W8 10.6
GTEX-13JVG-0011-R5a-SM-5MR4O 10.6
GTEX-T2IS-0011-R5A-SM-32QP4 10.6
GTEX-1445S-0011-R5a-SM-5PNUS 10.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 10.4
GTEX-OXRN-0011-R5A-SM-2I5EF 10.0
GTEX-11WQC-0011-R5a-SM-5BC74 9.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 9.4
GTEX-11UD1-0011-R5b-SM-5P9FP 9.3
GTEX-1477Z-0011-R5b-SM-5PNUO 9.3
GTEX-13112-0011-R5b-SM-5DUV8 9.1
GTEX-13CF2-0011-R5a-SM-5LZWS 9.0
GTEX-13FHP-0011-R5b-SM-5LZY2 9.0
GTEX-S7PM-0011-R5A-SM-3NM8G 8.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 8.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 8.8
GTEX-NL3H-0011-R5a-SM-2I3GB 8.7
GTEX-YJ89-0011-R5a-SM-4V6GM 8.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 8.3
GTEX-139T8-0011-R5b-SM-5J1MO 8.2
GTEX-ZV68-0011-R5a-SM-4YCDW 7.6
GTEX-13CIG-0011-R5b-SM-5L3F2 7.1
GTEX-13NZA-0011-R5b-SM-5KM4K 7.0
GTEX-145MG-0011-R5b-SM-5S2VU 6.7
GTEX-12WSH-0011-R5b-SM-5P9F3 5.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

38.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 38.6
FF:10164-103B2 76 years, female 49.6
FF:10379-105H1 89 years, female 27.5

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