Expression of FNDC9 in cancer - Summary

CANCER ATLAS

Gene description

Fibronectin type III domain containing 9

Protein class

Predicted membrane proteins

Protein evidence

Evidence at transcript level

Colorectal cancer

Breast cancer

Prostate cancer

Lung cancer

Liver cancer

STAINING SUMMARY

HPA011115	HPA017291

GENE INFORMATION
Gene name	FNDC9 (HGNC Symbol)
Synonyms	C5orf40, MGC27121
Description	Fibronectin type III domain containing 9 (HGNC Symbol)
Entrez gene summary
Chromosome	5
Cytoband	q33.3
Chromosome location (bp)	157341600 - 157345721
Protein evidence	Evidence at transcript level (all genes)
Ensembl	ENSG00000172568 (version 83.38)
Entrez gene	408263
UniProt	Q8TBE3 (UniProt - Evidence at transcript level)
neXtProt	NX_Q8TBE3
Antibodypedia	FNDC9 antibodies

PROTEIN BROWSER

FNDC9-001	FNDC9-002

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
FNDC9-001 ENSP00000310594 ENST00000312349	Q8TBE3 [Direct mapping] Fibronectin type III domain-containing protein 9 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005515 [protein binding] GO:0016021 [integral component of membrane] Show all	224 aa 25.3 kDa	No	1
FNDC9-002 ENSP00000429434 ENST00000520782	E5RIJ1 [Direct mapping] Fibronectin type III domain-containing protein 9 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005515 [protein binding] GO:0016021 [integral component of membrane] Show all	180 aa 20.7 kDa	No	1