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GOLIM4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:53.4TPM
GTEx:16.3RPKM
FANTOM5:56.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA001677

  

Antibody HPA002315

  

Endothelial cells

 Low   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Medium  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

53.4
overview Male, age 54
Sample 1
TPM: 61.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 57.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 58.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 80.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 44.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 31.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 57.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 59.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 37.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 54.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 59.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 55.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 37.0
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

16.3

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 10.2
Samples: 149

Max RPKM: 19.3
Min RPKM: 5.4
Std RPKM: 2.2
Median RPKM: 10.2
GTEX-YJ8A-1726-SM-5P9IQ 19.3
GTEX-YEC3-2026-SM-4WWFL 18.0
GTEX-12ZZY-2726-SM-5EQ45 15.2
GTEX-145LS-2926-SM-5O99G 15.0
GTEX-11ONC-1926-SM-5GU75 13.9
GTEX-ZAJG-2626-SM-5S2NU 13.7
GTEX-117XS-2226-SM-5GIE1 13.6
GTEX-XBED-1726-SM-47JYO 13.6
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 21.0
Samples: 196

Max RPKM: 52.2
Min RPKM: 5.7
Std RPKM: 9.1
Median RPKM: 21.3
GTEX-ZYWO-1626-SM-5E44H 52.2
GTEX-139YR-2126-SM-5KM11 44.8
GTEX-132AR-2726-SM-5PNVN 40.7
GTEX-WFG7-1526-SM-4LVMG 40.5
GTEX-R53T-1326-SM-48FCQ 40.1
GTEX-ZF2S-1926-SM-4WWAN 39.0
GTEX-WHWD-1226-SM-4OOS1 38.5
GTEX-11EM3-1526-SM-5A5KN 38.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

56.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 56.6
FF:10014-101C5 62,83,84 years, mixed 56.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.