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PNMA1
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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:46.6RPKM
FANTOM5:237.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Medium
 

Antibody staining

Antibody HPA003817

 

Antibody HPA015007

 

Glial cells

Not detected   Not detected  

Neuronal cells

Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

46.6

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 46.6
Samples: 117

Max RPKM: 79.7
Min RPKM: 15.3
Std RPKM: 15
Median RPKM: 46.3
GTEX-13G51-0011-R5a-SM-5L3EB 79.7
GTEX-T6MN-0011-R5A-SM-32QPD 78.2
GTEX-T2IS-0011-R5A-SM-32QP4 76.8
GTEX-131YS-0011-R5b-SM-5K7YB 74.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 72.6
GTEX-WWYW-0011-R5A-SM-3NB3E 71.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 71.7
GTEX-13NYS-0011-R5a-SM-5MR4D 71.4
GTEX-UTHO-0011-R5A-SM-3GIJD 70.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 67.7
GTEX-1399T-0011-R5b-SM-5IJDK 65.9
GTEX-T5JC-0011-R5A-SM-32PLK 65.8
GTEX-QVJO-0011-R5A-SM-2S1QM 65.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 64.0
GTEX-1313W-0011-R5b-SM-5L3EP 63.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 62.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 62.1
GTEX-S7SE-0011-R5A-SM-2XCDA 62.0
GTEX-139TT-0011-R5b-SM-5K7W8 61.7
GTEX-P44H-0011-R5A-SM-2XCEX 61.7
GTEX-145MH-0011-R5a-SM-5P9JT 60.5
GTEX-13X6J-0011-R5b-SM-5PNWT 60.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60.0
GTEX-R55E-0011-R5A-SM-2TC5N 59.9
GTEX-NL4W-0011-R5a-SM-2I3GD 59.4
GTEX-ZUA1-0011-R5b-SM-51MTG 59.1
GTEX-WZTO-0011-R5B-SM-3NMC5 58.6
GTEX-13VXU-0011-R5a-SM-5O9D7 58.3
GTEX-14BIM-0011-R5b-SM-5S2RM 58.3
GTEX-12WSC-0011-R5b-SM-5CVNS 58.1
GTEX-13JUV-0011-R5a-SM-5LZY5 58.1
GTEX-13OW5-0011-R5b-SM-5L3FR 57.5
GTEX-11OF3-0011-R5a-SM-57WB4 57.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 56.5
GTEX-WVLH-0011-R5A-SM-3MJFW 56.4
GTEX-X585-0011-R5A-SM-46MVI 56.1
GTEX-11GSP-0011-R5a-SM-57WBE 55.9
GTEX-WL46-0011-R5A-SM-3LK6V 54.6
GTEX-N7MS-0011-R5a-SM-2HMK8 53.6
GTEX-13SLX-0011-R5a-SM-5O9BV 53.5
GTEX-11H98-0011-R5b-SM-57WCF 53.4
GTEX-145LS-0011-R5a-SM-5SI65 53.2
GTEX-14ABY-0011-R5b-SM-5SI7B 52.9
GTEX-13OW6-0011-R5a-SM-5O9BK 52.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 52.0
GTEX-RU72-0011-R5A-SM-2TF6U 51.9
GTEX-PVOW-0011-R5A-SM-32PL7 51.7
GTEX-12WSB-0011-R5b-SM-5GU67 51.5
GTEX-NL3H-0011-R5a-SM-2I3GB 51.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 51.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 51.1
GTEX-132Q8-0011-R5a-SM-5IJDM 50.7
GTEX-12WSF-0011-R5a-SM-5HL8K 50.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 49.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 48.5
GTEX-13X6I-0011-R5a-SM-5PNWW 47.6
GTEX-XMD1-0011-R5A-SM-4AT47 47.5
GTEX-13JVG-0011-R5a-SM-5MR4O 46.4
GTEX-13OVL-0011-R5b-SM-5L3FU 46.3
GTEX-TSE9-0011-R5A-SM-3DB7J 46.1
GTEX-11NV4-0011-R5a-SM-5NQ88 45.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 45.9
GTEX-13FXS-0011-R5b-SM-5LZYE 45.8
GTEX-13X6K-0011-R5b-SM-5PNUE 45.8
GTEX-13OW7-0011-R5b-SM-5O9DM 44.7
GTEX-13FLV-0011-R5a-SM-5LZWT 43.7
GTEX-13NYB-0011-R5a-SM-5MR45 43.4
GTEX-13FLW-0011-R5a-SM-5LZX6 43.0
GTEX-12WSA-0011-R5b-SM-5GU5I 42.9
GTEX-Z93S-0011-R5b-SM-4RGNI 42.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 42.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 42.2
GTEX-13CIG-0011-R5b-SM-5L3F2 41.3
GTEX-X261-0011-R5A-SM-3NMB4 41.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 40.8
GTEX-OHPN-0011-R5A-SM-2I5FF 40.4
GTEX-13O3O-0011-R5b-SM-5KM44 40.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 39.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 39.7
GTEX-144GO-0011-R5a-SM-5PNUR 39.4
GTEX-13S7M-0011-R5b-SM-5P9HS 39.1
GTEX-RVPV-0011-R5A-SM-2TF69 39.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 37.5
GTEX-ZE7O-0011-R5a-SM-57WBO 37.3
GTEX-13OVH-0011-R5b-SM-5KM4L 36.6
GTEX-12WSD-0011-R5b-SM-5CVNG 35.9
GTEX-13CZV-0011-R5a-SM-5K7XA 35.6
GTEX-ZV68-0011-R5a-SM-4YCDW 35.4
GTEX-OXRN-0011-R5A-SM-2I5EF 35.2
GTEX-12ZZX-0011-R5a-SM-5HL89 35.0
GTEX-ZXG5-0011-R5b-SM-57WBN 34.9
GTEX-X4XX-0011-R5A-SM-46MWN 33.8
GTEX-XOTO-0011-R5A-SM-4B657 33.5
GTEX-YFC4-0011-R5a-SM-4RGLR 33.1
GTEX-139TS-0011-R5b-SM-5J2MZ 32.4
GTEX-12WSH-0011-R5b-SM-5P9F3 32.3
GTEX-QMR6-0011-R5A-SM-32PKT 31.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 30.5
GTEX-RVPU-0011-R5A-SM-2XCAD 30.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 29.9
GTEX-11WQC-0011-R5a-SM-5BC74 29.7
GTEX-1445S-0011-R5a-SM-5PNUS 29.1
GTEX-14BIN-0011-R5b-SM-5SI78 29.0
GTEX-139T8-0011-R5b-SM-5J1MO 28.0
GTEX-NPJ7-0011-R5a-SM-33HBK 26.0
GTEX-13112-0011-R5b-SM-5DUV8 25.8
GTEX-ZVT3-0011-R5a-SM-51MSI 25.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 25.7
GTEX-YJ89-0011-R5a-SM-4V6GM 23.0
GTEX-144GL-0011-R5b-SM-5PNUJ 22.4
GTEX-S7PM-0011-R5A-SM-3NM8G 19.8
GTEX-13CF2-0011-R5a-SM-5LZWS 19.2
GTEX-11UD1-0011-R5b-SM-5P9FP 19.1
GTEX-1477Z-0011-R5b-SM-5PNUO 18.9
GTEX-13FHP-0011-R5b-SM-5LZY2 15.7
GTEX-13NZA-0011-R5b-SM-5KM4K 15.3
GTEX-145MG-0011-R5b-SM-5S2VU 15.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

237.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 237.2
FF:10164-103B2 76 years, female 290.3
FF:10379-105H1 89 years, female 184.1

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