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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:32.3TPM
GTEx:8.0RPKM
FANTOM5:36.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
 

Antibody staining

Antibody HPA007200

  

Endothelial cells

 Low  

Glandular cells

 Low  
 

COLON - HPA RNA-seq

Average TPM

32.3
overview Male, age 54
Sample 1
TPM: 18.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 24.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 21.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 42.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 21.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 36.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 55.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 33.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 31.0
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 35.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 38.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 32.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 28.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.0

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 5.7
Samples: 149

Max RPKM: 9.6
Min RPKM: 3.1
Std RPKM: 1
Median RPKM: 5.7
GTEX-X15G-1526-SM-4PQZM 9.6
GTEX-146FH-2426-SM-5Q5EW 8.6
GTEX-XV7Q-2226-SM-4BRVY 8.4
GTEX-XQ8I-2326-SM-4BOQC 8.1
GTEX-131XG-1526-SM-5GCNQ 8.0
GTEX-11ONC-1926-SM-5GU75 7.8
GTEX-Y5LM-1426-SM-5RQJL 7.7
GTEX-XUJ4-2126-SM-4BOOX 7.6
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 9.7
Samples: 196

Max RPKM: 21.3
Min RPKM: 0.9
Std RPKM: 3.7
Median RPKM: 9.7
GTEX-1399R-2226-SM-5P9JB 21.3
GTEX-ZF2S-1926-SM-4WWAN 18.5
GTEX-PLZ5-1126-SM-3P613 17.6
GTEX-1399S-1926-SM-5J2M5 17.3
GTEX-WOFM-2026-SM-4OOSQ 16.9
GTEX-O5YT-1426-SM-3MJHC 16.7
GTEX-Y5LM-1526-SM-4VDTA 16.6
GTEX-XUZC-1326-SM-4BRV2 16.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

36.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 36.3
FF:10014-101C5 62,83,84 years, mixed 36.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.