We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
PCP4
  • premium

    TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:515.9RPKM
FANTOM5:3910.5Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA005792

 

Glial cells

Not detected  

Neuronal cells

High  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

515.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 515.9
Samples: 117

Max RPKM: 1325.6
Min RPKM: 38
Std RPKM: 302.5
Median RPKM: 492.5
GTEX-ZUA1-0011-R5b-SM-51MTG 1325.6
GTEX-T2IS-0011-R5A-SM-32QP4 1046.0
GTEX-145MH-0011-R5a-SM-5P9JT 1038.8
GTEX-T6MN-0011-R5A-SM-32QPD 1020.9
GTEX-11OF3-0011-R5a-SM-57WB4 1018.1
GTEX-1313W-0011-R5b-SM-5L3EP 1014.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 995.5
GTEX-12WSC-0011-R5b-SM-5CVNS 964.6
GTEX-T5JC-0011-R5A-SM-32PLK 958.1
GTEX-1399T-0011-R5b-SM-5IJDK 951.9
GTEX-131YS-0011-R5b-SM-5K7YB 945.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 918.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 902.6
GTEX-S7SE-0011-R5A-SM-2XCDA 901.1
GTEX-13SLX-0011-R5a-SM-5O9BV 892.1
GTEX-R55E-0011-R5A-SM-2TC5N 888.5
GTEX-TSE9-0011-R5A-SM-3DB7J 882.5
GTEX-13O3O-0011-R5b-SM-5KM44 866.0
GTEX-P44H-0011-R5A-SM-2XCEX 861.9
GTEX-13G51-0011-R5a-SM-5L3EB 852.7
GTEX-11H98-0011-R5b-SM-57WCF 849.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 840.6
GTEX-QVJO-0011-R5A-SM-2S1QM 806.9
GTEX-UTHO-0011-R5A-SM-3GIJD 806.2
GTEX-N7MT-0011-R5a-SM-2I3G6 799.8
GTEX-X585-0011-R5A-SM-46MVI 796.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 793.3
GTEX-Z93S-0011-R5b-SM-4RGNI 789.9
GTEX-13X6J-0011-R5b-SM-5PNWT 778.6
GTEX-11NV4-0011-R5a-SM-5NQ88 775.0
GTEX-13X6K-0011-R5b-SM-5PNUE 774.5
GTEX-N7MS-0011-R5a-SM-2HMK8 748.8
GTEX-13VXU-0011-R5a-SM-5O9D7 743.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 737.6
GTEX-WL46-0011-R5A-SM-3LK6V 728.6
GTEX-12WSF-0011-R5a-SM-5HL8K 726.6
GTEX-14ABY-0011-R5b-SM-5SI7B 725.0
GTEX-145LS-0011-R5a-SM-5SI65 721.0
GTEX-13CZV-0011-R5a-SM-5K7XA 702.6
GTEX-WWYW-0011-R5A-SM-3NB3E 692.9
GTEX-11GSP-0011-R5a-SM-57WBE 678.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 657.4
GTEX-WVLH-0011-R5A-SM-3MJFW 653.4
GTEX-14BIM-0011-R5b-SM-5S2RM 641.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 627.9
GTEX-RU72-0011-R5A-SM-2TF6U 624.4
GTEX-132Q8-0011-R5a-SM-5IJDM 624.1
GTEX-13OW7-0011-R5b-SM-5O9DM 611.5
GTEX-WZTO-0011-R5B-SM-3NMC5 602.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 595.7
GTEX-13FLV-0011-R5a-SM-5LZWT 572.9
GTEX-13FXS-0011-R5b-SM-5LZYE 568.8
GTEX-PVOW-0011-R5A-SM-32PL7 561.3
GTEX-13OVL-0011-R5b-SM-5L3FU 545.4
GTEX-13NYB-0011-R5a-SM-5MR45 538.9
GTEX-13FLW-0011-R5a-SM-5LZX6 535.1
GTEX-XOTO-0011-R5A-SM-4B657 533.4
GTEX-13X6I-0011-R5a-SM-5PNWW 500.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 492.5
GTEX-13JUV-0011-R5a-SM-5LZY5 470.4
GTEX-13OVH-0011-R5b-SM-5KM4L 466.5
GTEX-13NYS-0011-R5a-SM-5MR4D 462.0
GTEX-12WSD-0011-R5b-SM-5CVNG 455.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 449.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 438.9
GTEX-13S7M-0011-R5b-SM-5P9HS 422.4
GTEX-139TT-0011-R5b-SM-5K7W8 419.8
GTEX-13OW6-0011-R5a-SM-5O9BK 405.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 402.5
GTEX-13OW5-0011-R5b-SM-5L3FR 395.5
GTEX-12WSA-0011-R5b-SM-5GU5I 389.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 381.6
GTEX-RVPV-0011-R5A-SM-2TF69 365.2
GTEX-12ZZX-0011-R5a-SM-5HL89 358.9
GTEX-NL3H-0011-R5a-SM-2I3GB 342.5
GTEX-YFC4-0011-R5a-SM-4RGLR 339.3
GTEX-RVPU-0011-R5A-SM-2XCAD 328.7
GTEX-ZE7O-0011-R5a-SM-57WBO 325.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 320.5
GTEX-ZXG5-0011-R5b-SM-57WBN 315.3
GTEX-13JVG-0011-R5a-SM-5MR4O 314.2
GTEX-YJ89-0011-R5a-SM-4V6GM 313.0
GTEX-NL4W-0011-R5a-SM-2I3GD 298.4
GTEX-QMR6-0011-R5A-SM-32PKT 297.6
GTEX-13CIG-0011-R5b-SM-5L3F2 292.3
GTEX-14BIN-0011-R5b-SM-5SI78 288.4
GTEX-144GO-0011-R5a-SM-5PNUR 286.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 283.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 270.7
GTEX-12WSB-0011-R5b-SM-5GU67 259.2
GTEX-OHPN-0011-R5A-SM-2I5FF 254.8
GTEX-OXRN-0011-R5A-SM-2I5EF 246.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 225.6
GTEX-XMD1-0011-R5A-SM-4AT47 219.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 215.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 213.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 212.6
GTEX-NPJ7-0011-R5a-SM-33HBK 171.1
GTEX-X4XX-0011-R5A-SM-46MWN 160.4
GTEX-ZV68-0011-R5a-SM-4YCDW 152.6
GTEX-ZVT3-0011-R5a-SM-51MSI 152.4
GTEX-144GL-0011-R5b-SM-5PNUJ 110.2
GTEX-11WQC-0011-R5a-SM-5BC74 110.1
GTEX-X261-0011-R5A-SM-3NMB4 109.3
GTEX-13112-0011-R5b-SM-5DUV8 107.4
GTEX-139T8-0011-R5b-SM-5J1MO 100.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 88.0
GTEX-13FHP-0011-R5b-SM-5LZY2 84.8
GTEX-1445S-0011-R5a-SM-5PNUS 74.4
GTEX-1477Z-0011-R5b-SM-5PNUO 71.4
GTEX-139TS-0011-R5b-SM-5J2MZ 64.3
GTEX-11UD1-0011-R5b-SM-5P9FP 59.2
GTEX-13CF2-0011-R5a-SM-5LZWS 58.2
GTEX-12WSH-0011-R5b-SM-5P9F3 56.6
GTEX-S7PM-0011-R5A-SM-3NM8G 54.5
GTEX-13NZA-0011-R5b-SM-5KM4K 47.9
GTEX-145MG-0011-R5b-SM-5S2VU 38.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

3910.5

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 3910.5
FF:10379-105H1 89 years, female 6032.8
FF:10164-103B2 76 years, female 1788.2

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.