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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:91.4TPM
GTEx:30.7RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Not detected
Neuronal cells:Not detected
Neuropil:Medium
 

Antibody staining

Antibody HPA005792

 

Endothelial cells

Not detected  

Glial cells

Not detected  

Neuronal cells

Not detected  

Neuropil

Medium  
 
 

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

91.4

N/A Male, age 5
Sample 1
TPM: 217.0
overview Female, age 40
Sample 2
TPM: 21.2
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 36.1
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

30.7

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 26.8
Samples: 114

Max RPKM: 93.2
Min RPKM: 8.3
Std RPKM: 12.4
Median RPKM: 24
GTEX-11OF3-2926-SM-5HL78 93.2
GTEX-13FHO-3026-SM-5J1O9 59.6
GTEX-13VXU-2926-SM-5LU5C 52.4
GTEX-13FXS-3126-SM-5J2NN 51.0
GTEX-13FLW-1426-SM-5K7YE 49.9
GTEX-11O72-2926-SM-5BC4V 48.8
GTEX-13O3O-3126-SM-5KM3H 45.9
GTEX-13SLX-3126-SM-5S2Q5 45.6
GTEX-13OVH-3026-SM-5MR4N 44.8
GTEX-12WSC-3026-SM-5GCNF 44.3
GTEX-11DXY-3226-SM-5GIDE 44.2
GTEX-T5JC-2426-SM-3NMDB 43.6
GTEX-12126-1026-SM-5P9JJ 38.9
GTEX-PVOW-2526-SM-2XCF7 38.7
GTEX-WVLH-3026-SM-3MJG9 38.7
GTEX-YFC4-3126-SM-5PNV6 38.7
GTEX-11GSO-2926-SM-5HL73 38.0
GTEX-145MF-2726-SM-5O995 38.0
GTEX-13OW6-3026-SM-5J2MI 37.0
GTEX-WL46-2926-SM-3LK82 36.9
GTEX-145MH-3026-SM-5Q5DZ 36.6
GTEX-ZYFD-3026-SM-5E44C 36.4
GTEX-11WQK-3026-SM-5EQL6 35.7
GTEX-14ASI-3026-SM-5S2PN 35.4
GTEX-1313W-3126-SM-5LZUI 35.1
GTEX-Z93S-2926-SM-57WB9 35.0
GTEX-T2IS-3026-SM-32QPM 34.8
GTEX-Q2AG-2926-SM-2HMJ3 34.5
GTEX-ZUA1-3026-SM-59HJC 34.2
GTEX-11ZUS-2926-SM-5FQSL 33.9
GTEX-13O3Q-2926-SM-5KM45 33.6
GTEX-13NYB-3026-SM-5IJD7 33.5
GTEX-XOTO-3026-SM-4B65M 32.7
GTEX-11OC5-0726-SM-5P9JK 32.4
GTEX-T6MN-2626-SM-32PMQ 32.2
GTEX-Y8DK-0826-SM-4TT3T 31.3
GTEX-RNOR-2326-SM-2TF4I 31.2
GTEX-TSE9-3026-SM-3DB76 31.2
GTEX-14BMV-3026-SM-5S2PQ 30.9
GTEX-12ZZX-2926-SM-5GCOQ 30.8
GTEX-YJ89-3026-SM-5IFJI 30.8
GTEX-1399T-3026-SM-5KLZC 30.2
GTEX-12ZZY-3026-SM-5GCOU 28.9
GTEX-11NV4-2126-SM-5N9DS 28.6
GTEX-13NYS-3126-SM-5KLYV 28.3
GTEX-WZTO-2926-SM-3NM9I 28.3
GTEX-145LS-3126-SM-5Q5BY 27.9
GTEX-WWYW-3126-SM-3NB39 27.9
GTEX-Y111-2726-SM-4TT3N 27.6
GTEX-WHSE-3026-SM-3P5ZH 27.0
GTEX-13OW8-2826-SM-5L3GC 26.1
GTEX-QDT8-2926-SM-32PKC 25.1
GTEX-11PRG-2926-SM-5987A 24.8
GTEX-13FHP-3026-SM-5IJBS 24.5
GTEX-QVUS-2826-SM-3GADB 24.4
GTEX-13OVJ-2826-SM-5L3GW 24.1
GTEX-X585-3026-SM-46MWF 24.0
GTEX-13NYC-2826-SM-5K7WR 23.9
GTEX-11DXW-1126-SM-5H12Q 23.8
GTEX-11ONC-2926-SM-5P9JM 23.8
GTEX-11GS4-3126-SM-5A5LH 23.2
GTEX-1128S-2726-SM-5H12C 22.8
GTEX-ZAK1-3026-SM-5S2MJ 22.7
GTEX-13PL6-3126-SM-5LUAR 22.5
GTEX-131YS-3126-SM-5KLYT 22.3
GTEX-UTHO-3026-SM-3GAFB 21.7
GTEX-145MG-3026-SM-5RQJA 21.6
GTEX-13QIC-2926-SM-5J2NF 21.5
GTEX-QMR6-1426-SM-32PLA 20.7
GTEX-13PVQ-3026-SM-5SI93 20.5
GTEX-1192X-3126-SM-5N9BY 20.3
GTEX-12WSD-3126-SM-5HL7P 20.3
GTEX-144GL-3026-SM-5Q5CW 20.1
GTEX-1117F-3226-SM-5N9CT 20.0
GTEX-12WSH-3026-SM-5CVNI 19.9
GTEX-13S7M-3126-SM-5RQJQ 19.9
GTEX-X4XX-3026-SM-3NMB2 19.9
GTEX-11EI6-3026-SM-5GZZO 19.8
GTEX-13G51-3026-SM-5IJB8 19.8
GTEX-117XS-3026-SM-5N9CA 19.7
GTEX-12ZZW-2926-SM-5LZUP 19.5
GTEX-ZVT3-3026-SM-5E43N 18.4
GTEX-R55F-1326-SM-5S2V4 18.3
GTEX-13X6K-2926-SM-5Q5D5 18.0
GTEX-PWO3-0926-SM-2I5EY 17.8
GTEX-13X6J-3026-SM-5Q5CU 17.6
GTEX-11NUK-2926-SM-5A5MD 17.5
GTEX-14A5I-2926-SM-5Q5CQ 17.4
GTEX-11TTK-2926-SM-5PNYP 17.3
GTEX-RU72-3026-SM-5SI7Y 17.2
GTEX-111FC-3126-SM-5GZZ2 17.0
GTEX-139T8-1026-SM-5J2MC 16.9
GTEX-OXRN-2426-SM-2I5EQ 16.8
GTEX-12ZZZ-3026-SM-5BC67 16.4
GTEX-11GSP-3226-SM-5986O 15.9
GTEX-13JUV-2926-SM-5LZX7 15.7
GTEX-13JVG-3126-SM-5L3FH 15.2
GTEX-ZE7O-3126-SM-5HL5X 15.2
GTEX-QVJO-1426-SM-2S1QY 15.1
GTEX-13OW7-3026-SM-5L3GY 14.6
GTEX-132Q8-3026-SM-5PNVG 14.3
GTEX-NPJ7-2726-SM-2I3FT 14.3
GTEX-ZAJG-3126-SM-5HL9J 14.3
GTEX-11EMC-3226-SM-5EGKW 13.9
GTEX-NPJ8-1526-SM-2D7VU 13.8
GTEX-XLM4-3026-SM-4AT6L 13.4
GTEX-ZZPT-3026-SM-5GZXH 13.3
GTEX-144FL-3026-SM-5O99C 11.6
GTEX-12WSA-2926-SM-5EQ4D 10.6
GTEX-131XW-3126-SM-5LZUC 9.6
GTEX-147GR-3026-SM-5S2ML 9.6
GTEX-1445S-3026-SM-5O9BR 9.3
GTEX-13IVO-2926-SM-5L3CZ 8.3
GTEX-N7MT-1126-SM-5SI7V 8.3
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 34.9
Samples: 108

Max RPKM: 83.5
Min RPKM: 4.2
Std RPKM: 17.3
Median RPKM: 32.5
GTEX-13OW7-0011-R10a-SM-5L3H3 83.5
GTEX-13SLX-0011-R10a-SM-5P9HV 80.5
GTEX-13RTJ-0011-R10b-SM-5O9CW 77.8
GTEX-145MH-0011-R10b-SM-5PNUK 75.1
GTEX-12WSC-0011-R10a-SM-5GU57 72.4
GTEX-13O3O-0011-R10a-SM-5LUA9 71.0
GTEX-13NYB-0011-R10a-SM-5KM43 63.3
GTEX-14BIN-0011-R10a-SM-5S2UA 63.3
GTEX-13CZV-0011-R10b-SM-5LZYD 63.0
GTEX-13FHO-0011-R10b-SM-5J2MM 61.7
GTEX-13G51-0011-R10b-SM-5LZYF 58.0
GTEX-14ASI-0011-R10b-SM-5S2VZ 56.7
GTEX-13O3Q-0011-R10b-SM-5KM39 56.2
GTEX-13X6J-0011-R10b-SM-5PNWA 56.2
GTEX-11H98-0011-R10b-SM-5NQ98 55.7
GTEX-131YS-0011-R10b-SM-5EQ5N 55.6
GTEX-WZTO-0011-R10B-SM-4E3KB 54.0
GTEX-13FXS-0011-R10a-SM-5J2MA 53.0
GTEX-WVLH-0011-R10A-SM-3MJFM 52.7
GTEX-13N1W-0011-R10b-SM-5MR4H 51.3
GTEX-T6MN-0011-R10A-SM-32QP7 50.5
GTEX-145MG-0011-R10a-SM-5PNWG 48.4
GTEX-12WSE-0011-R10b-SM-5P9JV 48.3
GTEX-N7MS-0011-R10A-SM-2HMJK 46.5
GTEX-WL46-0011-R10A-SM-3MJFQ 46.2
GTEX-YFC4-0011-R10a-SM-4SOK5 46.2
GTEX-S7SE-0011-R10A-SM-2XCDF 43.0
GTEX-1313W-0011-R10b-SM-5DUXA 41.9
GTEX-132Q8-0011-R10b-SM-5DUWZ 41.9
GTEX-13FLW-0011-R10b-SM-5LZZF 41.6
GTEX-ZVZQ-0011-R10b-SM-51MRT 41.4
GTEX-145LU-0011-R10a-SM-5PNWJ 41.1
GTEX-13NYS-0011-R10a-SM-5MR4S 40.9
GTEX-N7MT-0011-R10A-SM-2I3E1 40.4
GTEX-WWYW-0011-R10A-SM-3NB35 40.4
GTEX-12ZZY-0011-R10b-SM-5HL7W 39.8
GTEX-13QIC-0011-R10a-SM-5O9C7 39.4
GTEX-12ZZZ-0011-R10a-SM-5P9HC 39.1
GTEX-Q2AG-0011-R10A-SM-2HMLA 38.7
GTEX-ZAB4-0011-R10a-SM-4SOKH 38.4
GTEX-13OVL-0011-R10a-SM-5L3GS 38.0
GTEX-X4EP-0011-R10B-SM-4QASJ 37.6
GTEX-T5JC-0011-R10A-SM-32PM2 37.4
GTEX-NL3H-0011-R10A-SM-2I3E9 36.4
GTEX-ZUA1-0011-R10a-SM-51MT6 35.4
GTEX-13QJC-0011-R10a-SM-5SI63 35.2
GTEX-145LS-0011-R10a-SM-5PNUQ 34.7
GTEX-13S7M-0011-R10b-SM-5PNZB 34.4
GTEX-13X6I-0011-R10a-SM-5PNWI 34.4
GTEX-12WSH-0011-R10a-SM-5LZUS 33.9
GTEX-ZF28-0011-R10a-SM-4WWEH 33.1
GTEX-12WSM-0011-R10a-SM-5DUWV 32.7
GTEX-147GR-0011-R10b-SM-5S2UM 32.6
GTEX-Y8DK-0011-R10A-SM-4SOK1 32.6
GTEX-X585-0011-R10A-SM-46MUY 32.4
GTEX-12WSF-0011-R10a-SM-5LZVH 32.3
GTEX-Z93S-0011-R10a-SM-4RGNM 32.2
GTEX-13X6K-0011-R10a-SM-5P9JR 32.0
GTEX-11WQK-0011-R10a-SM-5BC6R 31.9
GTEX-14BIL-0011-R10a-SM-5SI75 31.9
GTEX-P44H-0011-R10A-SM-2XCEK 31.6
GTEX-TSE9-0011-R10A-SM-3DB7O 30.6
GTEX-12ZZX-0011-R10b-SM-5DUWK 30.5
GTEX-ZDXO-0011-R10a-SM-4WWD8 30.4
GTEX-12ZZW-0011-R10b-SM-5HL9X 30.0
GTEX-11ZUS-0011-R10b-SM-5BC79 29.8
GTEX-QMR6-0011-R10A-SM-32PKO 29.5
GTEX-13OVJ-0011-R10b-SM-5L3HT 29.3
GTEX-13OW6-0011-R10a-SM-5L3HE 29.1
GTEX-12WSD-0011-R10b-SM-5GU79 28.7
GTEX-13OW8-0011-R10a-SM-5L3H6 28.5
GTEX-13FTZ-0011-R10b-SM-5KLZS 28.4
GTEX-13FLV-0011-R10b-SM-5LZZ2 28.3
GTEX-12126-0011-R10b-SM-5BC6T 26.9
GTEX-QDT8-0011-R10A-SM-32PKG 26.0
GTEX-RVPU-0011-R10A-SM-2XCAH 25.6
GTEX-QVUS-0011-R10A-SM-3GIK3 24.5
GTEX-YJ89-0011-R10a-SM-4SOK9 22.9
GTEX-131XH-0011-R10a-SM-5EGLJ 22.6
GTEX-NPJ8-0011-R10A-SM-2YUMO 22.5
GTEX-147F4-0011-R10b-SM-5S2WC 21.8
GTEX-X4XX-0011-R10B-SM-46MWO 21.0
GTEX-XLM4-0011-R10A-SM-4AT5P 20.8
GTEX-QVJO-0011-R10A-SM-2S1QJ 20.6
GTEX-13JUV-0011-R10b-SM-5LZXR 19.9
GTEX-NPJ7-0011-R10A-SM-2I3E5 19.8
GTEX-ZVT3-0011-R10b-SM-57WB6 19.4
GTEX-13N2G-0011-R10a-SM-5MR34 18.8
GTEX-11GSP-0011-R10a-SM-5NQ7J 17.6
GTEX-13NZA-0011-R10b-SM-5KM54 17.3
GTEX-13JVG-0011-R10b-SM-5KM2P 16.3
GTEX-X261-0011-R10B-SM-4E3JT 16.2
GTEX-NL4W-0011-R10A-SM-2I3DY 16.1
GTEX-ZXG5-0011-R10a-SM-57WDD 15.2
GTEX-OXRN-0011-R10A-SM-2I5GC 14.9
GTEX-OXRO-0011-R10A-SM-2I5EH 14.9
GTEX-139TS-0011-R10a-SM-5K7TU 14.5
GTEX-11WQC-0011-R10a-SM-57WCT 13.9
GTEX-131XW-0011-R10a-SM-5DUVA 13.4
GTEX-14753-0011-R10b-SM-5S2WE 13.0
GTEX-13SLW-0011-R10a-SM-5S2UI 12.8
GTEX-1477Z-0011-R10b-SM-5S2RF 12.1
GTEX-12WSA-0011-R10b-SM-5P9ET 11.6
GTEX-13IVO-0011-R10a-SM-5LZY3 8.2
GTEX-1445S-0011-R10a-SM-5PNWB 8.1
GTEX-ZV68-0011-R10a-SM-51MT7 7.3
GTEX-XMD1-0011-R10A-SM-4AT4A 6.7
GTEX-ZE7O-0011-R10a-SM-57WAZ 4.2
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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