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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:134.1TPM
GTEx:118.0RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Low
Neuronal cells:High
Neuropil:Low
 

Antibody staining

Antibody CAB002308

 

Endothelial cells

Not detected  

Glial cells

Low  

Neuronal cells

High  

Neuropil

Low  
 
 
 

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

134.1

N/A Male, age 5
Sample 1
TPM: 116.2
overview Female, age 40
Sample 2
TPM: 74.3
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 211.9
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

118.0

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 108.2
Samples: 114

Max RPKM: 192.5
Min RPKM: 0
Std RPKM: 39.1
Median RPKM: 115.9
GTEX-117XS-3026-SM-5N9CA 192.5
GTEX-131YS-3126-SM-5KLYT 189.5
GTEX-WVLH-3026-SM-3MJG9 177.4
GTEX-14BMV-3026-SM-5S2PQ 174.1
GTEX-Y8DK-0826-SM-4TT3T 169.9
GTEX-X4XX-3026-SM-3NMB2 168.5
GTEX-145MG-3026-SM-5RQJA 162.3
GTEX-13SLX-3126-SM-5S2Q5 160.9
GTEX-12WSC-3026-SM-5GCNF 156.2
GTEX-T5JC-2426-SM-3NMDB 156.1
GTEX-11NUK-2926-SM-5A5MD 155.1
GTEX-13O3Q-2926-SM-5KM45 152.5
GTEX-WL46-2926-SM-3LK82 151.3
GTEX-11DXY-3226-SM-5GIDE 150.9
GTEX-13O3O-3126-SM-5KM3H 150.8
GTEX-T6MN-2626-SM-32PMQ 150.4
GTEX-12126-1026-SM-5P9JJ 148.0
GTEX-WZTO-2926-SM-3NM9I 147.4
GTEX-YJ89-3026-SM-5IFJI 143.0
GTEX-ZYFD-3026-SM-5E44C 143.0
GTEX-11PRG-2926-SM-5987A 142.9
GTEX-13OW6-3026-SM-5J2MI 142.9
GTEX-X585-3026-SM-46MWF 142.7
GTEX-1313W-3126-SM-5LZUI 142.6
GTEX-13FLW-1426-SM-5K7YE 142.3
GTEX-13FXS-3126-SM-5J2NN 141.8
GTEX-12ZZX-2926-SM-5GCOQ 141.7
GTEX-14ASI-3026-SM-5S2PN 141.6
GTEX-ZAK1-3026-SM-5S2MJ 139.7
GTEX-1399T-3026-SM-5KLZC 139.6
GTEX-11OC5-0726-SM-5P9JK 136.7
GTEX-Y111-2726-SM-4TT3N 136.0
GTEX-145MH-3026-SM-5Q5DZ 134.3
GTEX-13QIC-2926-SM-5J2NF 133.4
GTEX-11GSO-2926-SM-5HL73 132.9
GTEX-13NYC-2826-SM-5K7WR 132.8
GTEX-11ZUS-2926-SM-5FQSL 132.7
GTEX-WHSE-3026-SM-3P5ZH 131.8
GTEX-QVJO-1426-SM-2S1QY 131.5
GTEX-13VXU-2926-SM-5LU5C 130.4
GTEX-144GL-3026-SM-5Q5CW 129.4
GTEX-Z93S-2926-SM-57WB9 129.1
GTEX-13NYB-3026-SM-5IJD7 127.6
GTEX-YFC4-3126-SM-5PNV6 126.0
GTEX-13OVH-3026-SM-5MR4N 125.1
GTEX-ZUA1-3026-SM-59HJC 124.3
GTEX-XOTO-3026-SM-4B65M 123.6
GTEX-WWYW-3126-SM-3NB39 122.6
GTEX-T2IS-3026-SM-32QPM 121.0
GTEX-1192X-3126-SM-5N9BY 120.6
GTEX-RNOR-2326-SM-2TF4I 120.4
GTEX-12WSH-3026-SM-5CVNI 120.0
GTEX-XLM4-3026-SM-4AT6L 120.0
GTEX-PVOW-2526-SM-2XCF7 119.5
GTEX-1128S-2726-SM-5H12C 117.5
GTEX-12ZZZ-3026-SM-5BC67 116.2
GTEX-13PL6-3126-SM-5LUAR 116.2
GTEX-ZE7O-3126-SM-5HL5X 115.7
GTEX-Q2AG-2926-SM-2HMJ3 112.0
GTEX-ZVT3-3026-SM-5E43N 111.4
GTEX-145LS-3126-SM-5Q5BY 110.1
GTEX-13NYS-3126-SM-5KLYV 105.8
GTEX-13OW8-2826-SM-5L3GC 105.0
GTEX-12ZZY-3026-SM-5GCOU 103.1
GTEX-14A5I-2926-SM-5Q5CQ 103.0
GTEX-13X6J-3026-SM-5Q5CU 102.0
GTEX-R55F-1326-SM-5S2V4 99.5
GTEX-11ONC-2926-SM-5P9JM 97.8
GTEX-11EI6-3026-SM-5GZZO 95.7
GTEX-RU72-3026-SM-5SI7Y 95.6
GTEX-11DXW-1126-SM-5H12Q 95.0
GTEX-13X6K-2926-SM-5Q5D5 94.2
GTEX-132Q8-3026-SM-5PNVG 93.1
GTEX-111FC-3126-SM-5GZZ2 92.5
GTEX-OXRN-2426-SM-2I5EQ 91.5
GTEX-11EMC-3226-SM-5EGKW 90.4
GTEX-145MF-2726-SM-5O995 90.0
GTEX-13FHO-3026-SM-5J1O9 89.0
GTEX-11GS4-3126-SM-5A5LH 88.8
GTEX-ZAJG-3126-SM-5HL9J 88.3
GTEX-13S7M-3126-SM-5RQJQ 86.6
GTEX-13FHP-3026-SM-5IJBS 86.4
GTEX-TSE9-3026-SM-3DB76 85.3
GTEX-131XW-3126-SM-5LZUC 81.7
GTEX-11NV4-2126-SM-5N9DS 79.3
GTEX-UTHO-3026-SM-3GAFB 76.0
GTEX-12ZZW-2926-SM-5LZUP 73.0
GTEX-13JUV-2926-SM-5LZX7 72.7
GTEX-QMR6-1426-SM-32PLA 70.8
GTEX-13OVJ-2826-SM-5L3GW 70.6
GTEX-13JVG-3126-SM-5L3FH 69.6
GTEX-NPJ8-1526-SM-2D7VU 69.2
GTEX-13PVQ-3026-SM-5SI93 66.9
GTEX-13IVO-2926-SM-5L3CZ 66.8
GTEX-12WSD-3126-SM-5HL7P 66.1
GTEX-QVUS-2826-SM-3GADB 65.1
GTEX-ZZPT-3026-SM-5GZXH 64.7
GTEX-13OW7-3026-SM-5L3GY 63.2
GTEX-11O72-2926-SM-5BC4V 62.8
GTEX-11WQK-3026-SM-5EQL6 61.1
GTEX-139T8-1026-SM-5J2MC 57.9
GTEX-N7MT-1126-SM-5SI7V 56.7
GTEX-NPJ7-2726-SM-2I3FT 56.2
GTEX-1117F-3226-SM-5N9CT 55.2
GTEX-147GR-3026-SM-5S2ML 53.7
GTEX-144FL-3026-SM-5O99C 52.8
GTEX-11GSP-3226-SM-5986O 51.7
GTEX-QDT8-2926-SM-32PKC 51.4
GTEX-13G51-3026-SM-5IJB8 41.6
GTEX-11TTK-2926-SM-5PNYP 41.4
GTEX-PWO3-0926-SM-2I5EY 28.8
GTEX-1445S-3026-SM-5O9BR 26.8
GTEX-12WSA-2926-SM-5EQ4D 18.6
GTEX-11OF3-2926-SM-5HL78 0.0
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 128.4
Samples: 108

Max RPKM: 330.9
Min RPKM: 23.7
Std RPKM: 56.1
Median RPKM: 122.9
GTEX-12ZZY-0011-R10b-SM-5HL7W 330.9
GTEX-13SLX-0011-R10a-SM-5P9HV 240.3
GTEX-13O3Q-0011-R10b-SM-5KM39 222.7
GTEX-12WSC-0011-R10a-SM-5GU57 217.6
GTEX-13O3O-0011-R10a-SM-5LUA9 216.7
GTEX-1313W-0011-R10b-SM-5DUXA 212.1
GTEX-13NYB-0011-R10a-SM-5KM43 206.1
GTEX-14ASI-0011-R10b-SM-5S2VZ 204.4
GTEX-NL3H-0011-R10A-SM-2I3E9 202.2
GTEX-13NYS-0011-R10a-SM-5MR4S 200.9
GTEX-T5JC-0011-R10A-SM-32PM2 200.4
GTEX-13N1W-0011-R10b-SM-5MR4H 198.1
GTEX-12WSF-0011-R10a-SM-5LZVH 197.7
GTEX-14BIN-0011-R10a-SM-5S2UA 197.7
GTEX-Y8DK-0011-R10A-SM-4SOK1 194.4
GTEX-12ZZX-0011-R10b-SM-5DUWK 192.8
GTEX-T6MN-0011-R10A-SM-32QP7 190.1
GTEX-13OW6-0011-R10a-SM-5L3HE 185.5
GTEX-131YS-0011-R10b-SM-5EQ5N 182.2
GTEX-12WSH-0011-R10a-SM-5LZUS 181.0
GTEX-X4XX-0011-R10B-SM-46MWO 180.8
GTEX-145MG-0011-R10a-SM-5PNWG 179.3
GTEX-X585-0011-R10A-SM-46MUY 176.7
GTEX-12WSE-0011-R10b-SM-5P9JV 176.1
GTEX-13OW7-0011-R10a-SM-5L3H3 176.0
GTEX-ZVZQ-0011-R10b-SM-51MRT 173.8
GTEX-WL46-0011-R10A-SM-3MJFQ 171.7
GTEX-13X6J-0011-R10b-SM-5PNWA 170.2
GTEX-YJ89-0011-R10a-SM-4SOK9 168.1
GTEX-13FXS-0011-R10a-SM-5J2MA 167.1
GTEX-WVLH-0011-R10A-SM-3MJFM 166.0
GTEX-147GR-0011-R10b-SM-5S2UM 165.9
GTEX-YFC4-0011-R10a-SM-4SOK5 163.1
GTEX-12WSM-0011-R10a-SM-5DUWV 161.8
GTEX-13QIC-0011-R10a-SM-5O9C7 161.3
GTEX-WZTO-0011-R10B-SM-4E3KB 156.0
GTEX-13RTJ-0011-R10b-SM-5O9CW 155.5
GTEX-13S7M-0011-R10b-SM-5PNZB 155.4
GTEX-12ZZZ-0011-R10a-SM-5P9HC 151.9
GTEX-131XH-0011-R10a-SM-5EGLJ 151.9
GTEX-WWYW-0011-R10A-SM-3NB35 149.9
GTEX-N7MS-0011-R10A-SM-2HMJK 149.8
GTEX-13FLW-0011-R10b-SM-5LZZF 147.2
GTEX-12126-0011-R10b-SM-5BC6T 144.8
GTEX-S7SE-0011-R10A-SM-2XCDF 143.4
GTEX-ZUA1-0011-R10a-SM-51MT6 135.8
GTEX-X4EP-0011-R10B-SM-4QASJ 134.2
GTEX-Z93S-0011-R10a-SM-4RGNM 129.9
GTEX-145MH-0011-R10b-SM-5PNUK 129.7
GTEX-XLM4-0011-R10A-SM-4AT5P 129.0
GTEX-N7MT-0011-R10A-SM-2I3E1 128.9
GTEX-ZF28-0011-R10a-SM-4WWEH 126.7
GTEX-ZDXO-0011-R10a-SM-4WWD8 126.1
GTEX-NPJ8-0011-R10A-SM-2YUMO 123.0
GTEX-13X6K-0011-R10a-SM-5P9JR 122.8
GTEX-ZVT3-0011-R10b-SM-57WB6 121.8
GTEX-Q2AG-0011-R10A-SM-2HMLA 120.7
GTEX-13CZV-0011-R10b-SM-5LZYD 120.6
GTEX-13OVL-0011-R10a-SM-5L3GS 117.7
GTEX-13FHO-0011-R10b-SM-5J2MM 117.0
GTEX-145LU-0011-R10a-SM-5PNWJ 117.0
GTEX-139TS-0011-R10a-SM-5K7TU 115.0
GTEX-132Q8-0011-R10b-SM-5DUWZ 112.5
GTEX-14BIL-0011-R10a-SM-5SI75 112.5
GTEX-13G51-0011-R10b-SM-5LZYF 111.6
GTEX-11H98-0011-R10b-SM-5NQ98 110.6
GTEX-13FLV-0011-R10b-SM-5LZZ2 110.5
GTEX-ZAB4-0011-R10a-SM-4SOKH 108.7
GTEX-13OW8-0011-R10a-SM-5L3H6 105.3
GTEX-13QJC-0011-R10a-SM-5SI63 104.8
GTEX-12WSD-0011-R10b-SM-5GU79 104.5
GTEX-13X6I-0011-R10a-SM-5PNWI 102.5
GTEX-13JUV-0011-R10b-SM-5LZXR 102.4
GTEX-11ZUS-0011-R10b-SM-5BC79 100.7
GTEX-13FTZ-0011-R10b-SM-5KLZS 100.7
GTEX-145LS-0011-R10a-SM-5PNUQ 99.2
GTEX-TSE9-0011-R10A-SM-3DB7O 95.4
GTEX-147F4-0011-R10b-SM-5S2WC 94.0
GTEX-QVJO-0011-R10A-SM-2S1QJ 91.7
GTEX-OXRN-0011-R10A-SM-2I5GC 90.1
GTEX-13N2G-0011-R10a-SM-5MR34 89.7
GTEX-X261-0011-R10B-SM-4E3JT 88.0
GTEX-QMR6-0011-R10A-SM-32PKO 87.8
GTEX-13NZA-0011-R10b-SM-5KM54 86.7
GTEX-13OVJ-0011-R10b-SM-5L3HT 82.3
GTEX-NPJ7-0011-R10A-SM-2I3E5 81.7
GTEX-11WQK-0011-R10a-SM-5BC6R 77.1
GTEX-11WQC-0011-R10a-SM-57WCT 76.6
GTEX-OXRO-0011-R10A-SM-2I5EH 74.4
GTEX-RVPU-0011-R10A-SM-2XCAH 74.0
GTEX-ZXG5-0011-R10a-SM-57WDD 71.8
GTEX-P44H-0011-R10A-SM-2XCEK 70.0
GTEX-QVUS-0011-R10A-SM-3GIK3 65.5
GTEX-13SLW-0011-R10a-SM-5S2UI 64.6
GTEX-11GSP-0011-R10a-SM-5NQ7J 60.2
GTEX-NL4W-0011-R10A-SM-2I3DY 56.3
GTEX-QDT8-0011-R10A-SM-32PKG 51.3
GTEX-13IVO-0011-R10a-SM-5LZY3 49.1
GTEX-ZE7O-0011-R10a-SM-57WAZ 44.7
GTEX-12ZZW-0011-R10b-SM-5HL9X 43.4
GTEX-XMD1-0011-R10A-SM-4AT4A 42.8
GTEX-13JVG-0011-R10b-SM-5KM2P 41.5
GTEX-14753-0011-R10b-SM-5S2WE 35.9
GTEX-ZV68-0011-R10a-SM-51MT7 31.9
GTEX-1477Z-0011-R10b-SM-5S2RF 31.8
GTEX-131XW-0011-R10a-SM-5DUVA 29.8
GTEX-12WSA-0011-R10b-SM-5P9ET 27.2
GTEX-1445S-0011-R10a-SM-5PNWB 23.7
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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