We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
XRCC6
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA047549

 

Antibody HPA062226

 

Antibody CAB004254

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  Santa Cruz Biotechnology
 

Product name

HPA047549   HPA062226   sc-5309  

Host species

Rabbit   Rabbit   Mouse  

Clonality

pAb   pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G  

Other gene match

     

Released in version

12   13   2  

References

     

VALIDATION SUMMARY

 
 

Antibody HPA047549

 

Antibody HPA062226

 

Antibody CAB004254

 
Immunocytochemistry


Validated

Validated

Validated
 

Validated

Validated
   
Immunohistochemistry

Supported   Supported   Supported  
Western blot


Validated
  Supported   Supported  
Protein array

Approved   Supported    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA047549

 

Antibody HPA062226

 

Antibody CAB004254

 

Formal validation: Genetic

Validated

Significant downregulation > 25% by both siRNA:s.
     

 

Relative fluorescence intensity (RFI)

     

Figure description

Nuclear region of segmented cells in 10x-images      

Antibody dilution

1:53      
 

Formal validation: Tagged protein

Validated

Antibody staining overlaps with GFP tagged protein
 
Validated

Antibody staining overlaps with GFP tagged protein
   

     

Figure description

Immunofluorescent staining of transgenic HeLa cells show antibody staining in nucleus but excluded from the nucleoli and GFP expression in nucleus but excluded from the nucleoli.   Immunofluorescent staining of transgenic HeLa cells show antibody staining in nucleus but excluded from the nucleoli and GFP expression in nucleus but excluded from the nucleoli.    

Antibody dilution

1:53   1:45    
 

Formal validation: Independent

Validated

Antibody staining overlaps with antibody HPA062226.
 
Validated

Antibody staining overlaps with antibody HPA047549.
   
 

Standard validation

Supported   Supported    

     

Figure description

Immunofluorescent staining of human cell line HEK 293 shows localization to nucleoplasm.   Immunofluorescent staining of human cell line RH-30 shows localization to nucleoplasm.    

Antibody dilution

1:53   1:45    

Literature conformity

The subcellular location is supported by literature.   The subcellular location is supported by literature.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA047549

 

Antibody HPA062226

 

Antibody CAB004254

 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunohistochemical staining of human breast shows strong nuclear positivity in glandular cells and myoepithelial cells.   Immunohistochemical staining of human colon shows strong nuclear positivity in glandular cells.   Immunohistochemical staining of human colon shows strong nuclear positivity in glandular cells.  

Expression

RNA: detected in 37 tissues
Protein: detected in 78 cell types
  RNA: detected in 37 tissues
Protein: detected in 72 cell types
  RNA: detected in 37 tissues
Protein: detected in 75 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:2500   1:75   1:3000  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA047549

 

Antibody HPA062226

 

Antibody CAB004254

 

Formal validation: Genetic

Validated

Downregulation visible in both siRNA lanes
     

     

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: siRNA 1
Lane 3: siRNA 2
Lane 4: Scrambled
     

Target mass (kDa)

69.8, 65.1, 64.3      

Loading control

Total protein image      

Antibody dilution

1:118      
 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Supported

Analysis performed using a standard panel of samples.
Single band corresponding to the predicted size in kDa (+/-20%).
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

     

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 230, 110, 82, 49.3, 32.2, 25.5, 17.6
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

69.8, 65.1, 64.3   69.8, 65.1, 64.3   69.8, 65.1, 64.3  

Antibody dilution

1:270   1:150   1:500  

PROTEIN ARRAY

 
 

Antibody HPA047549

 

Antibody HPA062226

 

Antibody CAB004254

 

Standard validation

Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
  Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:12000   1:1800    

ANTIGEN INFORMATION

 
 

Antibody HPA047549

 

Antibody HPA062226

 

Antibody CAB004254

 

Antigen

Recombinant protein fragment   Recombinant protein fragment   Recombinant protein  

Length (aa)

100   97    

Antigen sequence

PPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATP
EQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDL
 
DVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHL
KKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETR
   

Matching transcripts

XRCC6-001 - ENSP00000353192 [100%]
XRCC6-002 - ENSP00000384941 [100%]
XRCC6-003 - ENSP00000352257 [100%]
XRCC6-005 - ENSP00000384082 [100%]
XRCC6-006 - ENSP00000384257 [100%]
XRCC6-201 - ENSP00000403679 [100%]
  XRCC6-001 - ENSP00000353192 [100%]
XRCC6-002 - ENSP00000384941 [100%]
XRCC6-003 - ENSP00000352257 [100%]
XRCC6-005 - ENSP00000384082 [100%]
XRCC6-006 - ENSP00000384257 [100%]
XRCC6-201 - ENSP00000403679 [100%]
   

Other gene match

     
ANTIGEN VIEW
XRCC6-001
XRCC6-002
XRCC6-003
XRCC6-005
XRCC6-006
XRCC6-201
 

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.