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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:16.0RPKM
FANTOM5:41.9Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody staining

Antibody HPA063245

 

Antibody HPA064423

 

Antibody CAB007824

 

Glial cells

Low   Low   Not detected  

Neuronal cells

Low   Medium   Not detected  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

16.0

GTEx sample id

RPKM

13.915.718.97.225.3024681012141618202224
 
13.915.718.97.225.3024681012141618202224

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 16.0
Samples: 117

Max RPKM: 25.3
Min RPKM: 5.9
Std RPKM: 4.1
Median RPKM: 15.7
GTEX-13OW5-0011-R5b-SM-5L3FR 25.3
GTEX-QVJO-0011-R5A-SM-2S1QM 25.2
GTEX-144GO-0011-R5a-SM-5PNUR 25.1
GTEX-12WSB-0011-R5b-SM-5GU67 24.9
GTEX-11H98-0011-R5b-SM-57WCF 24.3
GTEX-WWYW-0011-R5A-SM-3NB3E 23.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 22.6
GTEX-N7MT-0011-R5a-SM-2I3G6 22.5
GTEX-UTHO-0011-R5A-SM-3GIJD 22.2
GTEX-131YS-0011-R5b-SM-5K7YB 22.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 21.6
GTEX-11GSP-0011-R5a-SM-57WBE 21.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 21.2
GTEX-13X6I-0011-R5a-SM-5PNWW 20.9
GTEX-14BIM-0011-R5b-SM-5S2RM 20.9
GTEX-13NYS-0011-R5a-SM-5MR4D 20.6
GTEX-T2IS-0011-R5A-SM-32QP4 20.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 20.4
GTEX-P44H-0011-R5A-SM-2XCEX 20.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 20.1
GTEX-13JUV-0011-R5a-SM-5LZY5 19.9
GTEX-13G51-0011-R5a-SM-5L3EB 19.8
GTEX-X261-0011-R5A-SM-3NMB4 19.8
GTEX-NL4W-0011-R5a-SM-2I3GD 19.7
GTEX-13CZV-0011-R5a-SM-5K7XA 19.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 19.4
GTEX-XMD1-0011-R5A-SM-4AT47 19.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 19.1
GTEX-1445S-0011-R5a-SM-5PNUS 19.0
GTEX-T6MN-0011-R5A-SM-32QPD 18.9
GTEX-13OW6-0011-R5a-SM-5O9BK 18.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 18.4
GTEX-WVLH-0011-R5A-SM-3MJFW 18.2
GTEX-RU72-0011-R5A-SM-2TF6U 18.0
GTEX-NL3H-0011-R5a-SM-2I3GB 17.9
GTEX-13FLV-0011-R5a-SM-5LZWT 17.8
GTEX-PVOW-0011-R5A-SM-32PL7 17.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 17.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 17.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 17.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 17.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 17.3
GTEX-12WSC-0011-R5b-SM-5CVNS 17.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 17.2
GTEX-S7SE-0011-R5A-SM-2XCDA 17.2
GTEX-132Q8-0011-R5a-SM-5IJDM 16.9
GTEX-13OVL-0011-R5b-SM-5L3FU 16.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 16.7
GTEX-1399T-0011-R5b-SM-5IJDK 16.5
GTEX-13FLW-0011-R5a-SM-5LZX6 16.5
GTEX-13JVG-0011-R5a-SM-5MR4O 16.5
GTEX-QMR6-0011-R5A-SM-32PKT 16.3
GTEX-12WSF-0011-R5a-SM-5HL8K 16.0
GTEX-12ZZX-0011-R5a-SM-5HL89 16.0
GTEX-13CIG-0011-R5b-SM-5L3F2 16.0
GTEX-OHPN-0011-R5A-SM-2I5FF 16.0
GTEX-R55E-0011-R5A-SM-2TC5N 15.9
GTEX-RVPU-0011-R5A-SM-2XCAD 15.7
GTEX-WZTO-0011-R5B-SM-3NMC5 15.7
GTEX-13SLX-0011-R5a-SM-5O9BV 15.5
GTEX-13X6K-0011-R5b-SM-5PNUE 15.5
GTEX-1313W-0011-R5b-SM-5L3EP 15.4
GTEX-13OW7-0011-R5b-SM-5O9DM 15.3
GTEX-13X6J-0011-R5b-SM-5PNWT 15.3
GTEX-ZXG5-0011-R5b-SM-57WBN 15.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 15.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 15.0
GTEX-NPJ7-0011-R5a-SM-33HBK 14.9
GTEX-11WQC-0011-R5a-SM-5BC74 14.8
GTEX-12WSA-0011-R5b-SM-5GU5I 14.8
GTEX-13S7M-0011-R5b-SM-5P9HS 14.8
GTEX-145LS-0011-R5a-SM-5SI65 14.8
GTEX-OXRN-0011-R5A-SM-2I5EF 14.8
GTEX-YFC4-0011-R5a-SM-4RGLR 14.8
GTEX-11OF3-0011-R5a-SM-57WB4 14.7
GTEX-14ABY-0011-R5b-SM-5SI7B 14.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 14.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 14.4
GTEX-13VXU-0011-R5a-SM-5O9D7 14.4
GTEX-12WSD-0011-R5b-SM-5CVNG 14.2
GTEX-13OVH-0011-R5b-SM-5KM4L 14.1
GTEX-RVPV-0011-R5A-SM-2TF69 14.1
GTEX-ZE7O-0011-R5a-SM-57WBO 14.1
GTEX-ZV68-0011-R5a-SM-4YCDW 14.1
GTEX-139T8-0011-R5b-SM-5J1MO 14.0
GTEX-T5JC-0011-R5A-SM-32PLK 14.0
GTEX-13FXS-0011-R5b-SM-5LZYE 13.9
GTEX-TSE9-0011-R5A-SM-3DB7J 13.9
GTEX-N7MS-0011-R5a-SM-2HMK8 13.8
GTEX-ZUA1-0011-R5b-SM-51MTG 13.6
GTEX-145MH-0011-R5a-SM-5P9JT 13.5
GTEX-X4XX-0011-R5A-SM-46MWN 13.5
GTEX-139TT-0011-R5b-SM-5K7W8 13.2
GTEX-X585-0011-R5A-SM-46MVI 12.9
GTEX-11UD1-0011-R5b-SM-5P9FP 12.6
GTEX-ZVT3-0011-R5a-SM-51MSI 12.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 11.7
GTEX-XOTO-0011-R5A-SM-4B657 11.5
GTEX-14BIN-0011-R5b-SM-5SI78 11.4
GTEX-13112-0011-R5b-SM-5DUV8 11.2
GTEX-S7PM-0011-R5A-SM-3NM8G 11.1
GTEX-11NV4-0011-R5a-SM-5NQ88 10.9
GTEX-139TS-0011-R5b-SM-5J2MZ 10.9
GTEX-13O3O-0011-R5b-SM-5KM44 10.8
GTEX-144GL-0011-R5b-SM-5PNUJ 10.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 10.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 10.7
GTEX-13NYB-0011-R5a-SM-5MR45 10.6
GTEX-YJ89-0011-R5a-SM-4V6GM 10.5
GTEX-WL46-0011-R5A-SM-3LK6V 9.3
GTEX-1477Z-0011-R5b-SM-5PNUO 8.7
GTEX-Z93S-0011-R5b-SM-4RGNI 8.6
GTEX-145MG-0011-R5b-SM-5S2VU 8.2
GTEX-13CF2-0011-R5a-SM-5LZWS 7.7
GTEX-12WSH-0011-R5b-SM-5P9F3 7.4
GTEX-13FHP-0011-R5b-SM-5LZY2 7.2
GTEX-13NZA-0011-R5b-SM-5KM4K 5.9
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

41.9

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 41.9
FF:10164-103B2 76 years, female 51.8
FF:10379-105H1 89 years, female 32.0

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