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SOFT TISSUE - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:51.2TPM
GTEx:31.8RPKM
FANTOM5:61.2Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Adipocytes:Low
Chondrocytes:Low
Fibroblasts:Low
Peripheral nerve:Not available
 

Antibody staining

Antibody HPA054437

  

Antibody HPA058511

  

Antibody CAB002776

  

Antibody CAB015122

  

Adipocytes

 Not detected   Not detected   Low   Not detected  

Chondrocytes

 Not detected   Not detected   Low  

Fibroblasts

 Not detected   Not detected   Low   Not detected  

Peripheral nerve

 Not detected  
       
       
       

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:Low
Fibroblasts:Low
Peripheral nerve:Low
 
 

Antibody staining

Antibody HPA054437

  

Antibody HPA058511

  

Antibody CAB002776

  

Antibody CAB015122

  

Adipocytes

 Not detected   Low   Not detected  

Fibroblasts

 Not detected   Not detected   Low  

Peripheral nerve

 Not detected   Not detected   Low   Not detected  
          
       
       
       

ADIPOSE TISSUE - HPA RNA-seq

Average TPM

51.2
N/A Female, age 80
Sample 1
TPM: 55.8
Cell types%
Adipocytes: 95
Other cell types: 5
N/A Female, age 45
Sample 2
TPM: 27.1
N/A Female, age 57
Sample 3
TPM: 27.9
Cell types%
Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 74
Sample 4
TPM: 74.9
Cell types%
Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 59
Sample 5
TPM: 70.5
Cell types%
Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM

31.8

GTEx sample id

RPKM
 

Adipose - Subcutaneous
Adipose - Subcutaneous
RPKM: 29.0
Samples: 350

Max RPKM: 70.3
Min RPKM: 10.5
Std RPKM: 9.3
Median RPKM: 27.5
GTEX-13JVG-0226-SM-5J1MW 70.3
GTEX-ZAJG-0226-SM-5HL81 64.9
GTEX-13NYS-0226-SM-5MR49 59.5
GTEX-NPJ8-0226-SM-48TBN 59.5
GTEX-XYKS-2726-SM-4E3IC 57.2
GTEX-111VG-2326-SM-5N9BK 55.6
GTEX-11GSO-2326-SM-5A5LX 53.6
GTEX-X88G-0226-SM-4GIE4 51.9
Show all
 

Adipose - Visceral (Omentum)
Adipose - Visceral (Omentum)
RPKM: 36.1
Samples: 227

Max RPKM: 80.7
Min RPKM: 11.3
Std RPKM: 11.4
Median RPKM: 33.8
GTEX-13S86-0926-SM-5SI6I 80.7
GTEX-13IVO-2426-SM-5K7V9 74.1
GTEX-12WSA-1626-SM-5EGJV 73.0
GTEX-11WQK-1526-SM-5EGKN 71.5
GTEX-ZAJG-1626-SM-5HL7I 71.1
GTEX-13PDP-1226-SM-5K7TW 68.7
GTEX-12584-2126-SM-5FQUM 61.4
GTEX-12ZZX-1726-SM-5BC63 60.6
Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million

61.2

FANTOM5 sample id

Sample description

Tags Per Million
Adipose tissue
Tags Per Million: 61.2
FF:10010-101C1 65,65,76 years, mixed 61.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.