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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:32.0RPKM
FANTOM5:147.4Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Medium
 

Antibody staining

Antibody HPA046791

 

Antibody CAB026383

 

Glial cells

Not detected   Not detected  

Neuronal cells

Not detected   High  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

32.0

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 32.0
Samples: 117

Max RPKM: 51.9
Min RPKM: 13.8
Std RPKM: 7.5
Median RPKM: 33.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 51.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 47.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 46.6
GTEX-N7MT-0011-R5a-SM-2I3G6 44.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 42.1
GTEX-N7MS-0011-R5a-SM-2HMK8 42.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 41.9
GTEX-13FXS-0011-R5b-SM-5LZYE 41.9
GTEX-11GSP-0011-R5a-SM-57WBE 41.6
GTEX-T5JC-0011-R5A-SM-32PLK 41.5
GTEX-145MH-0011-R5a-SM-5P9JT 41.4
GTEX-13G51-0011-R5a-SM-5L3EB 40.8
GTEX-13OW6-0011-R5a-SM-5O9BK 40.8
GTEX-R55E-0011-R5A-SM-2TC5N 40.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 40.5
GTEX-WL46-0011-R5A-SM-3LK6V 40.4
GTEX-13SLX-0011-R5a-SM-5O9BV 39.9
GTEX-RVPV-0011-R5A-SM-2TF69 39.5
GTEX-QVJO-0011-R5A-SM-2S1QM 39.4
GTEX-13X6I-0011-R5a-SM-5PNWW 39.2
GTEX-S7SE-0011-R5A-SM-2XCDA 39.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 38.8
GTEX-13OVL-0011-R5b-SM-5L3FU 38.7
GTEX-RU72-0011-R5A-SM-2TF6U 38.7
GTEX-WVLH-0011-R5A-SM-3MJFW 38.7
GTEX-XMD1-0011-R5A-SM-4AT47 38.5
GTEX-145LS-0011-R5a-SM-5SI65 38.4
GTEX-X585-0011-R5A-SM-46MVI 38.2
GTEX-131YS-0011-R5b-SM-5K7YB 38.0
GTEX-NL4W-0011-R5a-SM-2I3GD 37.5
GTEX-13FLW-0011-R5a-SM-5LZX6 36.9
GTEX-14BIM-0011-R5b-SM-5S2RM 36.8
GTEX-11H98-0011-R5b-SM-57WCF 36.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 36.5
GTEX-WZTO-0011-R5B-SM-3NMC5 36.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 36.4
GTEX-13JVG-0011-R5a-SM-5MR4O 36.1
GTEX-T6MN-0011-R5A-SM-32QPD 36.1
GTEX-WWYW-0011-R5A-SM-3NB3E 36.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 35.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 35.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 35.7
GTEX-14ABY-0011-R5b-SM-5SI7B 35.4
GTEX-11OF3-0011-R5a-SM-57WB4 35.0
GTEX-13NYS-0011-R5a-SM-5MR4D 35.0
GTEX-13S7M-0011-R5b-SM-5P9HS 34.7
GTEX-13VXU-0011-R5a-SM-5O9D7 34.5
GTEX-UTHO-0011-R5A-SM-3GIJD 34.4
GTEX-13OW7-0011-R5b-SM-5O9DM 34.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 33.8
GTEX-1313W-0011-R5b-SM-5L3EP 33.6
GTEX-13OW5-0011-R5b-SM-5L3FR 33.6
GTEX-X4XX-0011-R5A-SM-46MWN 33.6
GTEX-132Q8-0011-R5a-SM-5IJDM 33.4
GTEX-13X6K-0011-R5b-SM-5PNUE 33.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 33.2
GTEX-ZE7O-0011-R5a-SM-57WBO 33.2
GTEX-13JUV-0011-R5a-SM-5LZY5 33.1
GTEX-1399T-0011-R5b-SM-5IJDK 32.8
GTEX-13O3O-0011-R5b-SM-5KM44 32.8
GTEX-13OVH-0011-R5b-SM-5KM4L 32.3
GTEX-13X6J-0011-R5b-SM-5PNWT 32.3
GTEX-OHPN-0011-R5A-SM-2I5FF 32.2
GTEX-13NYB-0011-R5a-SM-5MR45 32.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 32.0
GTEX-12WSF-0011-R5a-SM-5HL8K 31.9
GTEX-RVPU-0011-R5A-SM-2XCAD 31.8
GTEX-12WSB-0011-R5b-SM-5GU67 31.7
GTEX-139TT-0011-R5b-SM-5K7W8 31.6
GTEX-12WSC-0011-R5b-SM-5CVNS 31.0
GTEX-13CZV-0011-R5a-SM-5K7XA 30.4
GTEX-13FLV-0011-R5a-SM-5LZWT 30.4
GTEX-11NV4-0011-R5a-SM-5NQ88 30.2
GTEX-ZUA1-0011-R5b-SM-51MTG 29.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 28.8
GTEX-PVOW-0011-R5A-SM-32PL7 28.4
GTEX-144GO-0011-R5a-SM-5PNUR 28.3
GTEX-X261-0011-R5A-SM-3NMB4 28.2
GTEX-YFC4-0011-R5a-SM-4RGLR 27.9
GTEX-Z93S-0011-R5b-SM-4RGNI 27.9
GTEX-P44H-0011-R5A-SM-2XCEX 27.6
GTEX-12WSD-0011-R5b-SM-5CVNG 27.5
GTEX-1445S-0011-R5a-SM-5PNUS 27.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 27.2
GTEX-XOTO-0011-R5A-SM-4B657 27.2
GTEX-139TS-0011-R5b-SM-5J2MZ 27.0
GTEX-ZXG5-0011-R5b-SM-57WBN 27.0
GTEX-TSE9-0011-R5A-SM-3DB7J 26.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 26.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 25.9
GTEX-14BIN-0011-R5b-SM-5SI78 25.8
GTEX-144GL-0011-R5b-SM-5PNUJ 25.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 25.4
GTEX-OXRN-0011-R5A-SM-2I5EF 25.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 24.7
GTEX-139T8-0011-R5b-SM-5J1MO 24.4
GTEX-NL3H-0011-R5a-SM-2I3GB 24.2
GTEX-12ZZX-0011-R5a-SM-5HL89 23.7
GTEX-ZVT3-0011-R5a-SM-51MSI 22.7
GTEX-13112-0011-R5b-SM-5DUV8 22.6
GTEX-YJ89-0011-R5a-SM-4V6GM 22.2
GTEX-13CIG-0011-R5b-SM-5L3F2 22.0
GTEX-13FHP-0011-R5b-SM-5LZY2 21.6
GTEX-QMR6-0011-R5A-SM-32PKT 21.6
GTEX-11UD1-0011-R5b-SM-5P9FP 21.4
GTEX-ZV68-0011-R5a-SM-4YCDW 20.8
GTEX-NPJ7-0011-R5a-SM-33HBK 20.5
GTEX-11WQC-0011-R5a-SM-5BC74 20.1
GTEX-T2IS-0011-R5A-SM-32QP4 19.2
GTEX-1477Z-0011-R5b-SM-5PNUO 19.0
GTEX-13CF2-0011-R5a-SM-5LZWS 18.8
GTEX-12WSA-0011-R5b-SM-5GU5I 18.4
GTEX-S7PM-0011-R5A-SM-3NM8G 17.8
GTEX-12WSH-0011-R5b-SM-5P9F3 16.7
GTEX-145MG-0011-R5b-SM-5S2VU 14.6
GTEX-13NZA-0011-R5b-SM-5KM4K 13.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

147.4

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 147.4
FF:10164-103B2 76 years, female 184.8
FF:10379-105H1 89 years, female 110.0

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