Cell atlas - RNF39 - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

RNF39

TISSUE

CELL

CANCER

CELL ATLAS RNA EXPRESSION HUMAN CELLS

GENE/PROTEIN

Antibody validation

Dictionary
	Centrosome
	Plasma membrane
	Vesicles

Human cell
	Centrosome
	Plasma Membrane
	Vesicles

Please wait until image is loaded before changing channels

GENERAL INFORMATION
Gene name	RNF39
Gene description	Ring finger protein 39
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	2
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION
Summary	Localized to the plasma membrane, centrosome & vesicles.
RNA cell category	Cell line enhanced (U-266/84)
Protein evidence	Evidence at protein level
Main location	Localized to the Vesicles (uncertain), Plasma membrane (uncertain), Centrosome (uncertain)

DATA RELIABILITY
Reliability score	Uncertain based on 1 antibody. CAB019278
	SHOW MORE

ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Cell line enhanced (U-266/84) Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

HUMAN CELLS

Summary

Localized to the plasma membrane, centrosome & vesicles.

Main location

Vesicles (uncertain), Plasma membrane (uncertain), Centrosome (uncertain)


	Toggle channels	Low High G1 S G2 M N/A

Thumbnail	Antibody	Cell line	Location	Single-cell variation	Cell cycle dependent variation
	CAB019278	A-431	Vesicles
			Plasma membrane
			Centrosome
	CAB019278	U-2 OS	Vesicles
			Plasma membrane
			Centrosome
	CAB019278	U-251 MG	Plasma membrane
	CAB019278	U-251 MG	Centrosome

GENE INFORMATION
Gene name	RNF39 (HGNC Symbol)
Synonyms	HZFw1, LIRF
Description	Ring finger protein 39 (HGNC Symbol)
Entrez gene summary	This gene lies within the major histocompatibility complex class I region on chromosome 6. Studies of a similar rat protein suggest that this gene encodes a protein that plays a role in an early phase of synaptic plasticity. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Chromosome	6
Cytoband	p22.1
Chromosome location (bp)	30070266 - 30075887
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000204618 (version 83.38)
Entrez gene	80352
UniProt	Q9H2S5 (UniProt - Evidence at transcript level)
neXtProt	NX_Q9H2S5
Antibodypedia	RNF39 antibodies

PROTEIN BROWSER

RNF39-001	RNF39-002

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
RNF39-001 ENSP00000244360 ENST00000244360	Q9H2S5 [Direct mapping] RING finger protein 39 Q96QB5 [Target identity:100%; Query identity:100%] HCGV protein; HZFW1 protein; Ring finger protein 39, isoform CRA_a Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all	GO:0005515 [protein binding] GO:0005575 [cellular_component] GO:0005737 [cytoplasm] GO:0008150 [biological_process] GO:0008270 [zinc ion binding] Show all	420 aa 45.5 kDa	No	0
RNF39-002 ENSP00000365942 ENST00000376751	Q9H2S5 [Direct mapping] RING finger protein 39 Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all	GO:0005515 [protein binding] GO:0005575 [cellular_component] GO:0005737 [cytoplasm] GO:0008150 [biological_process] GO:0008270 [zinc ion binding] Show all	354 aa 38.2 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.