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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:38.9RPKM
FANTOM5:0.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA043780

 

Antibody CAB032534

 

Glial cells

Not detected   Not detected  

Neuronal cells

Low   Low  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

38.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 38.9
Samples: 117

Max RPKM: 335.9
Min RPKM: 2.6
Std RPKM: 56.8
Median RPKM: 18.3
GTEX-145MG-0011-R5b-SM-5S2VU 335.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 280.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 269.3
GTEX-13FHP-0011-R5b-SM-5LZY2 196.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 180.6
GTEX-N7MT-0011-R5a-SM-2I3G6 169.4
GTEX-OHPN-0011-R5A-SM-2I5FF 161.7
GTEX-RVPU-0011-R5A-SM-2XCAD 148.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 131.4
GTEX-1477Z-0011-R5b-SM-5PNUO 119.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 117.4
GTEX-1445S-0011-R5a-SM-5PNUS 90.4
GTEX-11H98-0011-R5b-SM-57WCF 83.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 80.8
GTEX-OXRN-0011-R5A-SM-2I5EF 79.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 76.5
GTEX-11UD1-0011-R5b-SM-5P9FP 69.1
GTEX-13NYS-0011-R5a-SM-5MR4D 68.4
GTEX-13JVG-0011-R5a-SM-5MR4O 64.7
GTEX-13CZV-0011-R5a-SM-5K7XA 58.3
GTEX-ZVT3-0011-R5a-SM-51MSI 53.9
GTEX-UTHO-0011-R5A-SM-3GIJD 53.5
GTEX-RVPV-0011-R5A-SM-2TF69 50.3
GTEX-145LS-0011-R5a-SM-5SI65 50.2
GTEX-X261-0011-R5A-SM-3NMB4 45.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 45.1
GTEX-NL4W-0011-R5a-SM-2I3GD 44.6
GTEX-S7SE-0011-R5A-SM-2XCDA 39.3
GTEX-QVJO-0011-R5A-SM-2S1QM 38.9
GTEX-139T8-0011-R5b-SM-5J1MO 35.4
GTEX-YJ89-0011-R5a-SM-4V6GM 33.9
GTEX-11NV4-0011-R5a-SM-5NQ88 29.4
GTEX-ZUA1-0011-R5b-SM-51MTG 29.3
GTEX-12WSF-0011-R5a-SM-5HL8K 28.8
GTEX-13FXS-0011-R5b-SM-5LZYE 28.6
GTEX-13NZA-0011-R5b-SM-5KM4K 28.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 28.2
GTEX-ZV68-0011-R5a-SM-4YCDW 28.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 27.3
GTEX-NL3H-0011-R5a-SM-2I3GB 27.1
GTEX-QMR6-0011-R5A-SM-32PKT 27.0
GTEX-XOTO-0011-R5A-SM-4B657 26.7
GTEX-RU72-0011-R5A-SM-2TF6U 25.7
GTEX-TSE9-0011-R5A-SM-3DB7J 25.0
GTEX-Z93S-0011-R5b-SM-4RGNI 24.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 24.8
GTEX-ZE7O-0011-R5a-SM-57WBO 24.5
GTEX-WWYW-0011-R5A-SM-3NB3E 23.4
GTEX-R55E-0011-R5A-SM-2TC5N 23.2
GTEX-13OW7-0011-R5b-SM-5O9DM 22.9
GTEX-13SLX-0011-R5a-SM-5O9BV 22.5
GTEX-S7PM-0011-R5A-SM-3NM8G 21.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 21.4
GTEX-T6MN-0011-R5A-SM-32QPD 19.6
GTEX-XMD1-0011-R5A-SM-4AT47 19.6
GTEX-11GSP-0011-R5a-SM-57WBE 19.0
GTEX-12WSD-0011-R5b-SM-5CVNG 18.6
GTEX-144GO-0011-R5a-SM-5PNUR 18.5
GTEX-13S7M-0011-R5b-SM-5P9HS 18.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 18.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 17.5
GTEX-13X6I-0011-R5a-SM-5PNWW 17.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 17.5
GTEX-T5JC-0011-R5A-SM-32PLK 16.9
GTEX-P44H-0011-R5A-SM-2XCEX 16.6
GTEX-13JUV-0011-R5a-SM-5LZY5 15.4
GTEX-132Q8-0011-R5a-SM-5IJDM 15.3
GTEX-14ABY-0011-R5b-SM-5SI7B 15.3
GTEX-13CIG-0011-R5b-SM-5L3F2 15.1
GTEX-13OVH-0011-R5b-SM-5KM4L 14.9
GTEX-X4XX-0011-R5A-SM-46MWN 14.2
GTEX-139TT-0011-R5b-SM-5K7W8 14.1
GTEX-WZTO-0011-R5B-SM-3NMC5 14.1
GTEX-YFC4-0011-R5a-SM-4RGLR 14.1
GTEX-13VXU-0011-R5a-SM-5O9D7 14.0
GTEX-13FLW-0011-R5a-SM-5LZX6 13.2
GTEX-13CF2-0011-R5a-SM-5LZWS 12.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 12.7
GTEX-13X6J-0011-R5b-SM-5PNWT 12.6
GTEX-13OW5-0011-R5b-SM-5L3FR 12.5
GTEX-12WSH-0011-R5b-SM-5P9F3 12.4
GTEX-13X6K-0011-R5b-SM-5PNUE 12.3
GTEX-ZXG5-0011-R5b-SM-57WBN 12.2
GTEX-NPJ7-0011-R5a-SM-33HBK 12.1
GTEX-144GL-0011-R5b-SM-5PNUJ 11.7
GTEX-N7MS-0011-R5a-SM-2HMK8 11.5
GTEX-1399T-0011-R5b-SM-5IJDK 10.7
GTEX-1313W-0011-R5b-SM-5L3EP 10.6
GTEX-14BIM-0011-R5b-SM-5S2RM 10.3
GTEX-145MH-0011-R5a-SM-5P9JT 10.1
GTEX-14BIN-0011-R5b-SM-5SI78 10.0
GTEX-13OW6-0011-R5a-SM-5O9BK 9.7
GTEX-WL46-0011-R5A-SM-3LK6V 9.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 9.4
GTEX-13112-0011-R5b-SM-5DUV8 9.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 9.1
GTEX-11OF3-0011-R5a-SM-57WB4 8.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 8.9
GTEX-WVLH-0011-R5A-SM-3MJFW 8.0
GTEX-13FLV-0011-R5a-SM-5LZWT 7.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 6.3
GTEX-139TS-0011-R5b-SM-5J2MZ 6.1
GTEX-12WSB-0011-R5b-SM-5GU67 5.8
GTEX-13NYB-0011-R5a-SM-5MR45 5.3
GTEX-13OVL-0011-R5b-SM-5L3FU 5.2
GTEX-X585-0011-R5A-SM-46MVI 5.0
GTEX-12WSA-0011-R5b-SM-5GU5I 4.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 4.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 4.7
GTEX-13G51-0011-R5a-SM-5L3EB 3.7
GTEX-T2IS-0011-R5A-SM-32QP4 3.7
GTEX-11WQC-0011-R5a-SM-5BC74 3.2
GTEX-12WSC-0011-R5b-SM-5CVNS 3.2
GTEX-PVOW-0011-R5A-SM-32PL7 3.2
GTEX-12ZZX-0011-R5a-SM-5HL89 3.0
GTEX-131YS-0011-R5b-SM-5K7YB 3.0
GTEX-13O3O-0011-R5b-SM-5KM44 2.6
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

0.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 0.6
FF:10379-105H1 89 years, female 0.7
FF:10164-103B2 76 years, female 0.5

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