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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:48.5TPM
GTEx:27.2RPKM

CEREBRAL CORTEX - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Not detected
Neuronal cells:Not detected
Neuropil:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA043780

 

Antibody CAB032534

 

Endothelial cells

Low   Not detected  

Glial cells

Not detected   Not detected  

Neuronal cells

Not detected   Not detected  

Neuropil

Not detected   Not detected  
   
   
   

CEREBRAL CORTEX - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

48.5

N/A Male, age 5
Sample 1
TPM: 72.5
overview Female, age 40
Sample 2
TPM: 25.0
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 47.8
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

27.2

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 30.0
Samples: 114

Max RPKM: 346.7
Min RPKM: 3.5
Std RPKM: 48.4
Median RPKM: 15.4
GTEX-1445S-3026-SM-5O9BR 346.7
GTEX-13OVJ-2826-SM-5L3GW 295.0
GTEX-1192X-3126-SM-5N9BY 210.6
GTEX-11ONC-2926-SM-5P9JM 143.7
GTEX-12ZZW-2926-SM-5LZUP 101.4
GTEX-NPJ8-1526-SM-2D7VU 96.8
GTEX-11TTK-2926-SM-5PNYP 80.6
GTEX-144FL-3026-SM-5O99C 75.6
GTEX-PWO3-0926-SM-2I5EY 75.2
GTEX-145MG-3026-SM-5RQJA 70.1
GTEX-QVUS-2826-SM-3GADB 68.7
GTEX-QVJO-1426-SM-2S1QY 66.0
GTEX-11EMC-3226-SM-5EGKW 61.3
GTEX-OXRN-2426-SM-2I5EQ 54.3
GTEX-13FHO-3026-SM-5J1O9 52.0
GTEX-13QIC-2926-SM-5J2NF 46.9
GTEX-145MF-2726-SM-5O995 46.0
GTEX-1117F-3226-SM-5N9CT 42.5
GTEX-132Q8-3026-SM-5PNVG 41.1
GTEX-131XW-3126-SM-5LZUC 39.7
GTEX-139T8-1026-SM-5J2MC 38.7
GTEX-144GL-3026-SM-5Q5CW 38.3
GTEX-145LS-3126-SM-5Q5BY 33.4
GTEX-WHSE-3026-SM-3P5ZH 33.1
GTEX-13NYS-3126-SM-5KLYV 31.7
GTEX-13OW8-2826-SM-5L3GC 30.8
GTEX-13JUV-2926-SM-5LZX7 29.9
GTEX-ZZPT-3026-SM-5GZXH 29.4
GTEX-13X6J-3026-SM-5Q5CU 27.2
GTEX-11GS4-3126-SM-5A5LH 26.6
GTEX-XOTO-3026-SM-4B65M 25.4
GTEX-11GSP-3226-SM-5986O 25.2
GTEX-1399T-3026-SM-5KLZC 24.5
GTEX-ZE7O-3126-SM-5HL5X 24.0
GTEX-Q2AG-2926-SM-2HMJ3 23.6
GTEX-T5JC-2426-SM-3NMDB 23.2
GTEX-13O3Q-2926-SM-5KM45 22.8
GTEX-14A5I-2926-SM-5Q5CQ 22.8
GTEX-11O72-2926-SM-5BC4V 20.9
GTEX-11WQK-3026-SM-5EQL6 20.8
GTEX-12WSD-3126-SM-5HL7P 20.7
GTEX-1128S-2726-SM-5H12C 20.3
GTEX-13JVG-3126-SM-5L3FH 19.7
GTEX-13OVH-3026-SM-5MR4N 19.5
GTEX-13S7M-3126-SM-5RQJQ 19.4
GTEX-ZAJG-3126-SM-5HL9J 19.0
GTEX-13SLX-3126-SM-5S2Q5 18.9
GTEX-XLM4-3026-SM-4AT6L 18.8
GTEX-13FXS-3126-SM-5J2NN 18.1
GTEX-NPJ7-2726-SM-2I3FT 17.7
GTEX-13IVO-2926-SM-5L3CZ 17.6
GTEX-13PVQ-3026-SM-5SI93 17.2
GTEX-WWYW-3126-SM-3NB39 17.2
GTEX-1313W-3126-SM-5LZUI 16.8
GTEX-X4XX-3026-SM-3NMB2 16.7
GTEX-147GR-3026-SM-5S2ML 16.2
GTEX-13FLW-1426-SM-5K7YE 15.8
GTEX-11NV4-2126-SM-5N9DS 15.1
GTEX-WL46-2926-SM-3LK82 14.7
GTEX-T6MN-2626-SM-32PMQ 14.1
GTEX-Y8DK-0826-SM-4TT3T 13.9
GTEX-11OC5-0726-SM-5P9JK 13.8
GTEX-13NYC-2826-SM-5K7WR 13.7
GTEX-YJ89-3026-SM-5IFJI 13.7
GTEX-13PL6-3126-SM-5LUAR 13.6
GTEX-WVLH-3026-SM-3MJG9 13.4
GTEX-ZUA1-3026-SM-59HJC 13.2
GTEX-13VXU-2926-SM-5LU5C 12.9
GTEX-13X6K-2926-SM-5Q5D5 12.2
GTEX-11EI6-3026-SM-5GZZO 12.1
GTEX-YFC4-3126-SM-5PNV6 11.9
GTEX-14BMV-3026-SM-5S2PQ 11.8
GTEX-11OF3-2926-SM-5HL78 11.4
GTEX-ZYFD-3026-SM-5E44C 11.2
GTEX-RU72-3026-SM-5SI7Y 11.1
GTEX-117XS-3026-SM-5N9CA 10.6
GTEX-Z93S-2926-SM-57WB9 10.6
GTEX-T2IS-3026-SM-32QPM 10.5
GTEX-12126-1026-SM-5P9JJ 10.2
GTEX-11ZUS-2926-SM-5FQSL 10.1
GTEX-WZTO-2926-SM-3NM9I 9.9
GTEX-ZVT3-3026-SM-5E43N 9.9
GTEX-12ZZZ-3026-SM-5BC67 9.7
GTEX-N7MT-1126-SM-5SI7V 9.7
GTEX-TSE9-3026-SM-3DB76 9.3
GTEX-12WSA-2926-SM-5EQ4D 9.2
GTEX-X585-3026-SM-46MWF 9.1
GTEX-ZAK1-3026-SM-5S2MJ 9.1
GTEX-13OW7-3026-SM-5L3GY 9.0
GTEX-145MH-3026-SM-5Q5DZ 9.0
GTEX-QMR6-1426-SM-32PLA 8.8
GTEX-UTHO-3026-SM-3GAFB 8.6
GTEX-11GSO-2926-SM-5HL73 8.5
GTEX-13FHP-3026-SM-5IJBS 8.3
GTEX-11PRG-2926-SM-5987A 8.2
GTEX-12WSH-3026-SM-5CVNI 8.0
GTEX-R55F-1326-SM-5S2V4 7.7
GTEX-111FC-3126-SM-5GZZ2 7.2
GTEX-Y111-2726-SM-4TT3N 6.9
GTEX-QDT8-2926-SM-32PKC 6.8
GTEX-13O3O-3126-SM-5KM3H 6.7
GTEX-13G51-3026-SM-5IJB8 6.6
GTEX-PVOW-2526-SM-2XCF7 6.4
GTEX-131YS-3126-SM-5KLYT 6.3
GTEX-13NYB-3026-SM-5IJD7 6.3
GTEX-12ZZY-3026-SM-5GCOU 6.2
GTEX-14ASI-3026-SM-5S2PN 6.1
GTEX-RNOR-2326-SM-2TF4I 6.1
GTEX-13OW6-3026-SM-5J2MI 6.0
GTEX-11DXW-1126-SM-5H12Q 5.6
GTEX-11DXY-3226-SM-5GIDE 5.1
GTEX-12WSC-3026-SM-5GCNF 4.8
GTEX-12ZZX-2926-SM-5GCOQ 4.8
GTEX-11NUK-2926-SM-5A5MD 3.5
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 24.3
Samples: 108

Max RPKM: 142.4
Min RPKM: 3
Std RPKM: 24.5
Median RPKM: 14.7
GTEX-13OVJ-0011-R10b-SM-5L3HT 142.4
GTEX-1445S-0011-R10a-SM-5PNWB 116.2
GTEX-11H98-0011-R10b-SM-5NQ98 100.2
GTEX-1477Z-0011-R10b-SM-5S2RF 93.4
GTEX-13SLW-0011-R10a-SM-5S2UI 87.2
GTEX-11ZUS-0011-R10b-SM-5BC79 83.7
GTEX-X4EP-0011-R10B-SM-4QASJ 72.7
GTEX-12ZZW-0011-R10b-SM-5HL9X 71.9
GTEX-S7SE-0011-R10A-SM-2XCDF 58.3
GTEX-131XW-0011-R10a-SM-5DUVA 55.0
GTEX-14753-0011-R10b-SM-5S2WE 50.7
GTEX-ZE7O-0011-R10a-SM-57WAZ 46.4
GTEX-11GSP-0011-R10a-SM-5NQ7J 45.4
GTEX-145MG-0011-R10a-SM-5PNWG 45.0
GTEX-13CZV-0011-R10b-SM-5LZYD 44.8
GTEX-RVPU-0011-R10A-SM-2XCAH 44.2
GTEX-NL4W-0011-R10A-SM-2I3DY 41.8
GTEX-X261-0011-R10B-SM-4E3JT 38.8
GTEX-13QIC-0011-R10a-SM-5O9C7 37.8
GTEX-OXRO-0011-R10A-SM-2I5EH 37.7
GTEX-13NYS-0011-R10a-SM-5MR4S 35.1
GTEX-NPJ8-0011-R10A-SM-2YUMO 34.5
GTEX-147F4-0011-R10b-SM-5S2WC 33.9
GTEX-13FHO-0011-R10b-SM-5J2MM 33.5
GTEX-OXRN-0011-R10A-SM-2I5GC 31.3
GTEX-13JVG-0011-R10b-SM-5KM2P 31.1
GTEX-QVJO-0011-R10A-SM-2S1QJ 29.6
GTEX-QVUS-0011-R10A-SM-3GIK3 27.7
GTEX-XMD1-0011-R10A-SM-4AT4A 27.7
GTEX-ZV68-0011-R10a-SM-51MT7 27.7
GTEX-13RTJ-0011-R10b-SM-5O9CW 27.2
GTEX-ZF28-0011-R10a-SM-4WWEH 26.8
GTEX-N7MT-0011-R10A-SM-2I3E1 26.3
GTEX-13IVO-0011-R10a-SM-5LZY3 24.7
GTEX-145LS-0011-R10a-SM-5PNUQ 24.4
GTEX-P44H-0011-R10A-SM-2XCEK 24.4
GTEX-NPJ7-0011-R10A-SM-2I3E5 24.2
GTEX-132Q8-0011-R10b-SM-5DUWZ 23.1
GTEX-13NZA-0011-R10b-SM-5KM54 23.0
GTEX-ZVZQ-0011-R10b-SM-51MRT 22.9
GTEX-ZUA1-0011-R10a-SM-51MT6 22.8
GTEX-12WSF-0011-R10a-SM-5LZVH 21.4
GTEX-14BIL-0011-R10a-SM-5SI75 21.4
GTEX-13O3O-0011-R10a-SM-5LUA9 20.8
GTEX-11WQK-0011-R10a-SM-5BC6R 20.5
GTEX-13X6I-0011-R10a-SM-5PNWI 19.9
GTEX-13QJC-0011-R10a-SM-5SI63 18.8
GTEX-13SLX-0011-R10a-SM-5P9HV 18.5
GTEX-ZVT3-0011-R10b-SM-57WB6 18.1
GTEX-12WSE-0011-R10b-SM-5P9JV 16.9
GTEX-ZXG5-0011-R10a-SM-57WDD 15.7
GTEX-13FXS-0011-R10a-SM-5J2MA 15.0
GTEX-13OW8-0011-R10a-SM-5L3H6 14.9
GTEX-ZAB4-0011-R10a-SM-4SOKH 14.9
GTEX-N7MS-0011-R10A-SM-2HMJK 14.5
GTEX-13JUV-0011-R10b-SM-5LZXR 14.4
GTEX-NL3H-0011-R10A-SM-2I3E9 14.4
GTEX-TSE9-0011-R10A-SM-3DB7O 14.2
GTEX-WWYW-0011-R10A-SM-3NB35 14.1
GTEX-13X6J-0011-R10b-SM-5PNWA 14.0
GTEX-T5JC-0011-R10A-SM-32PM2 13.5
GTEX-145LU-0011-R10a-SM-5PNWJ 12.5
GTEX-Z93S-0011-R10a-SM-4RGNM 12.0
GTEX-Q2AG-0011-R10A-SM-2HMLA 11.9
GTEX-12WSD-0011-R10b-SM-5GU79 11.7
GTEX-XLM4-0011-R10A-SM-4AT5P 11.5
GTEX-13OW7-0011-R10a-SM-5L3H3 11.4
GTEX-145MH-0011-R10b-SM-5PNUK 11.2
GTEX-QMR6-0011-R10A-SM-32PKO 11.1
GTEX-147GR-0011-R10b-SM-5S2UM 11.0
GTEX-12WSA-0011-R10b-SM-5P9ET 10.9
GTEX-X4XX-0011-R10B-SM-46MWO 10.9
GTEX-12ZZZ-0011-R10a-SM-5P9HC 10.7
GTEX-YFC4-0011-R10a-SM-4SOK5 10.6
GTEX-13FLV-0011-R10b-SM-5LZZ2 10.3
GTEX-13FLW-0011-R10b-SM-5LZZF 10.2
GTEX-WVLH-0011-R10A-SM-3MJFM 10.1
GTEX-T6MN-0011-R10A-SM-32QP7 10.0
GTEX-13S7M-0011-R10b-SM-5PNZB 9.6
GTEX-13G51-0011-R10b-SM-5LZYF 9.4
GTEX-14BIN-0011-R10a-SM-5S2UA 9.3
GTEX-13X6K-0011-R10a-SM-5P9JR 9.2
GTEX-YJ89-0011-R10a-SM-4SOK9 9.1
GTEX-WL46-0011-R10A-SM-3MJFQ 8.8
GTEX-131XH-0011-R10a-SM-5EGLJ 8.3
GTEX-X585-0011-R10A-SM-46MUY 8.1
GTEX-12WSC-0011-R10a-SM-5GU57 7.8
GTEX-13N1W-0011-R10b-SM-5MR4H 7.8
GTEX-11WQC-0011-R10a-SM-57WCT 7.4
GTEX-13O3Q-0011-R10b-SM-5KM39 7.4
GTEX-13OVL-0011-R10a-SM-5L3GS 7.4
GTEX-13FTZ-0011-R10b-SM-5KLZS 7.2
GTEX-WZTO-0011-R10B-SM-4E3KB 7.2
GTEX-12WSH-0011-R10a-SM-5LZUS 7.1
GTEX-1313W-0011-R10b-SM-5DUXA 7.1
GTEX-ZDXO-0011-R10a-SM-4WWD8 6.6
GTEX-13OW6-0011-R10a-SM-5L3HE 5.9
GTEX-Y8DK-0011-R10A-SM-4SOK1 5.9
GTEX-14ASI-0011-R10b-SM-5S2VZ 5.6
GTEX-131YS-0011-R10b-SM-5EQ5N 5.4
GTEX-12WSM-0011-R10a-SM-5DUWV 5.3
GTEX-13N2G-0011-R10a-SM-5MR34 5.3
GTEX-QDT8-0011-R10A-SM-32PKG 5.0
GTEX-139TS-0011-R10a-SM-5K7TU 4.7
GTEX-13NYB-0011-R10a-SM-5KM43 4.6
GTEX-12ZZX-0011-R10b-SM-5DUWK 3.2
GTEX-12ZZY-0011-R10b-SM-5HL7W 3.1
GTEX-12126-0011-R10b-SM-5BC6T 3.0
Show all

CEREBRAL CORTEX - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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