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TISSUE ATLAS PRIMARY DATA SPLEEN

GENE/PROTEIN

Antibody validation


Dictionary

Spleen

Tissue proteome

Spleen

SPLEEN - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:309.4TPM
GTEx:639.7RPKM
FANTOM5:0.2Tags Per Million

SPLEEN - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in red pulp:High
Cells in white pulp:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA043780

 

Antibody CAB032534

 

Cells in red pulp

High   Medium  

Cells in white pulp

Not detected   Medium  
   
   
   

SPLEEN - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

309.4

overview Female, age 60
Sample 1
TPM: 381.3
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Male, age 17
Sample 2
TPM: 151.3
Cell types%
Lymphocytes: 40
Macrophages: 35
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 5
overview Male, age 20
Sample 3
TPM: 493.1
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Female, age 19
Sample 4
TPM: 468.0
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 65
Sample 5
TPM: 53.4
Cell types%
Lymphocytes: 35
Macrophages: 30
Endothelial cells: 20
Fibroblasts: 10
Other cell types: 5

SPLEEN - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

639.7

GTEx sample id

RPKM

 

Spleen

Spleen
RPKM: 639.7
Samples: 104

Max RPKM: 5911.8
Min RPKM: 17.2
Std RPKM: 924.7
Median RPKM: 235.6
GTEX-XQ8I-1726-SM-4BOQB 5911.8
GTEX-POMQ-0126-SM-48TD6 4378.0
GTEX-UPK5-1626-SM-4JBHI 2452.1
GTEX-U3ZN-0126-SM-4DXUM 2308.2
GTEX-11P7K-0426-SM-5BC5H 2290.6
GTEX-QV44-0126-SM-4R1KH 2282.7
GTEX-146FQ-0626-SM-5LU9U 2214.2
GTEX-YB5E-0426-SM-5IFHR 2213.1
GTEX-QLQW-0126-SM-447BK 2179.0
GTEX-ZAB5-0526-SM-5CVMU 2171.9
GTEX-11EQ9-0426-SM-5A5JY 2022.8
GTEX-13S86-0126-SM-5S2PI 2011.1
GTEX-11VI4-0126-SM-5GU6Z 1832.7
GTEX-Z9EW-0726-SM-5HL9H 1579.4
GTEX-PX3G-0926-SM-48U12 1564.9
GTEX-PLZ6-0126-SM-48TC6 1525.9
GTEX-ZV6S-0826-SM-5NQ6Z 1407.8
GTEX-WFON-0126-SM-4LVM9 1273.7
GTEX-139YR-0426-SM-5IFFV 1198.8
GTEX-R55G-0226-SM-48FEI 1193.9
GTEX-14DAR-0326-SM-5S2PS 1083.1
GTEX-11P81-1326-SM-5GU5S 1070.8
GTEX-XPVG-0626-SM-4B65B 909.8
GTEX-YEC4-0126-SM-4W21T 788.3
GTEX-12WSG-0926-SM-5EGIH 774.0
GTEX-146FR-1926-SM-5NQA6 736.4
GTEX-Q734-0226-SM-48U1A 684.9
GTEX-ZZPU-0126-SM-5E446 641.0
GTEX-PW2O-0126-SM-48TC8 619.9
GTEX-13PL7-1126-SM-5MR5O 579.6
GTEX-QDVN-0526-SM-48TZ4 576.4
GTEX-13N11-0126-SM-5KM2Z 576.3
GTEX-P4PP-0926-SM-48TBZ 558.9
GTEX-ZLFU-0526-SM-4WWBN 558.7
GTEX-147F3-0126-SM-5NQBJ 530.9
GTEX-12WSK-0126-SM-5GCO7 481.4
GTEX-ZYFG-0726-SM-5GIDX 458.0
GTEX-VJYA-0126-SM-4KL1P 412.0
GTEX-Y3I4-0126-SM-4TT26 392.8
GTEX-139T6-0226-SM-5IFGZ 382.0
GTEX-X3Y1-0126-SM-4PQZA 381.1
GTEX-131XE-1126-SM-5EGHW 375.4
GTEX-P4QS-0926-SM-48TBS 358.8
GTEX-ZDTT-1026-SM-5KM19 353.7
GTEX-13VXT-1326-SM-5LU3Y 346.1
GTEX-QV31-0126-SM-447BP 332.9
GTEX-YFCO-0926-SM-5LUA5 323.0
GTEX-W5WG-0626-SM-4SOID 295.4
GTEX-O5YT-0926-SM-48TDG 281.0
GTEX-13U4I-1626-SM-5IFFR 279.2
GTEX-132QS-0226-SM-5IFFZ 246.9
GTEX-12WSJ-0526-SM-5GCOZ 238.3
GTEX-117YX-2126-SM-5GIEL 232.9
GTEX-U3ZH-0126-SM-4DXUK 232.2
GTEX-Y3IK-0126-SM-4WWE9 230.9
GTEX-13X6H-0726-SM-5Q5BX 218.3
GTEX-S4Z8-0226-SM-4AD5K 210.0
GTEX-ZLWG-0426-SM-4WWFA 196.4
GTEX-XMK1-0126-SM-4B65F 191.1
GTEX-12WSN-0126-SM-5DUX5 189.1
GTEX-12BJ1-0726-SM-5EGGF 185.0
GTEX-1399S-0226-SM-5IFFG 176.3
GTEX-XGQ4-0126-SM-4AT4H 176.3
GTEX-ZVP2-0526-SM-51MSC 168.3
GTEX-OIZH-0926-SM-48TBR 162.3
GTEX-144GN-2126-SM-5O99D 161.7
GTEX-XXEK-0126-SM-4BRVU 161.3
GTEX-11LCK-0126-SM-5A5M5 152.6
GTEX-X4LF-0226-SM-4QAS8 140.4
GTEX-145MN-0126-SM-5RQHY 135.3
GTEX-1399R-0226-SM-5IJGG 117.8
GTEX-RUSQ-0126-SM-47JWV 114.7
GTEX-XAJ8-0126-SM-47JYG 114.2
GTEX-ZPU1-1026-SM-4YCEQ 114.1
GTEX-T5JW-0126-SM-4DM6K 112.1
GTEX-Q2AH-0226-SM-48U1I 110.6
GTEX-QMRM-0226-SM-4R1K7 107.0
GTEX-1122O-0526-SM-5N9DM 103.3
GTEX-13CF3-0226-SM-5J1NW 103.3
GTEX-11XUK-0426-SM-5EQML 102.6
GTEX-Y5LM-0326-SM-4VBRN 102.0
GTEX-X585-1826-SM-4QAS3 97.6
GTEX-OOBJ-0926-SM-48TDO 97.2
GTEX-XV7Q-0126-SM-4BRVK 96.8
GTEX-11NSD-0426-SM-5N9CR 94.2
GTEX-UJHI-0126-SM-4IHLP 84.5
GTEX-WHWD-0126-SM-4OORS 81.7
GTEX-XUJ4-0226-SM-4BOP8 79.1
GTEX-ZP4G-0326-SM-4YCEF 70.6
GTEX-Y8LW-0126-SM-4VBS1 65.9
GTEX-1211K-0426-SM-5FQTP 64.0
GTEX-ZVZP-0726-SM-59HKA 56.6
GTEX-11DXX-0726-SM-5H12X 54.6
GTEX-U4B1-0526-SM-4DXTK 52.6
GTEX-ZYWO-0226-SM-5GZX3 52.1
GTEX-QCQG-0226-SM-48U28 51.2
GTEX-131XG-0426-SM-5IFGD 49.4
GTEX-13111-0126-SM-5EGHO 41.0
GTEX-YB5K-1926-SM-4VDT4 40.9
GTEX-S3XE-0626-SM-4AD6B 37.8
GTEX-Y114-0726-SM-4TT6U 33.4
GTEX-14E6E-1226-SM-5S2R5 22.6
GTEX-13PVR-0326-SM-5RQJY 22.5
GTEX-13FH7-1326-SM-5IFG8 17.2
Show all

SPLEEN - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

0.2

FANTOM5 sample id

Sample description

Tags Per Million

Spleen
Tags Per Million: 0.2
FF:10025-101D7 39,50,70 years, male 0.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.