We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
REPIN1
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:23.9RPKM
FANTOM5:60.9Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Low
 

Antibody staining

Antibody HPA036022

 

Glial cells

Low  

Neuronal cells

Low  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

23.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 23.9
Samples: 117

Max RPKM: 33.7
Min RPKM: 10.7
Std RPKM: 4.6
Median RPKM: 24.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 33.7
GTEX-13FXS-0011-R5b-SM-5LZYE 33.2
GTEX-WWYW-0011-R5A-SM-3NB3E 33.1
GTEX-13NYS-0011-R5a-SM-5MR4D 33.0
GTEX-XMD1-0011-R5A-SM-4AT47 32.1
GTEX-14BIM-0011-R5b-SM-5S2RM 31.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 31.4
GTEX-X585-0011-R5A-SM-46MVI 31.4
GTEX-132Q8-0011-R5a-SM-5IJDM 31.3
GTEX-X4XX-0011-R5A-SM-46MWN 31.3
GTEX-13X6K-0011-R5b-SM-5PNUE 31.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 30.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 30.2
GTEX-T5JC-0011-R5A-SM-32PLK 29.2
GTEX-12WSF-0011-R5a-SM-5HL8K 28.7
GTEX-13FLW-0011-R5a-SM-5LZX6 28.6
GTEX-13NYB-0011-R5a-SM-5MR45 28.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 28.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 27.9
GTEX-13X6I-0011-R5a-SM-5PNWW 27.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 27.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 27.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 27.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 27.4
GTEX-13G51-0011-R5a-SM-5L3EB 27.4
GTEX-131YS-0011-R5b-SM-5K7YB 27.2
GTEX-WL46-0011-R5A-SM-3LK6V 27.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 27.0
GTEX-145MH-0011-R5a-SM-5P9JT 26.9
GTEX-N7MS-0011-R5a-SM-2HMK8 26.9
GTEX-ZE7O-0011-R5a-SM-57WBO 26.9
GTEX-12WSB-0011-R5b-SM-5GU67 26.7
GTEX-N7MT-0011-R5a-SM-2I3G6 26.6
GTEX-WVLH-0011-R5A-SM-3MJFW 26.6
GTEX-WZTO-0011-R5B-SM-3NMC5 26.5
GTEX-11H98-0011-R5b-SM-57WCF 26.4
GTEX-RVPV-0011-R5A-SM-2TF69 26.4
GTEX-13CZV-0011-R5a-SM-5K7XA 26.3
GTEX-T6MN-0011-R5A-SM-32QPD 26.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 26.3
GTEX-13OW6-0011-R5a-SM-5O9BK 26.1
GTEX-13SLX-0011-R5a-SM-5O9BV 26.1
GTEX-13OVH-0011-R5b-SM-5KM4L 25.9
GTEX-R55E-0011-R5A-SM-2TC5N 25.6
GTEX-11GSP-0011-R5a-SM-57WBE 25.5
GTEX-14ABY-0011-R5b-SM-5SI7B 25.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 25.4
GTEX-13OVL-0011-R5b-SM-5L3FU 25.2
GTEX-YFC4-0011-R5a-SM-4RGLR 25.1
GTEX-145LS-0011-R5a-SM-5SI65 25.0
GTEX-UTHO-0011-R5A-SM-3GIJD 25.0
GTEX-13JUV-0011-R5a-SM-5LZY5 24.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 24.8
GTEX-1399T-0011-R5b-SM-5IJDK 24.7
GTEX-X261-0011-R5A-SM-3NMB4 24.7
GTEX-13FLV-0011-R5a-SM-5LZWT 24.5
GTEX-RU72-0011-R5A-SM-2TF6U 24.5
GTEX-12WSC-0011-R5b-SM-5CVNS 24.4
GTEX-13S7M-0011-R5b-SM-5P9HS 24.3
GTEX-13OW5-0011-R5b-SM-5L3FR 24.1
GTEX-QVJO-0011-R5A-SM-2S1QM 24.0
GTEX-12ZZX-0011-R5a-SM-5HL89 23.9
GTEX-13VXU-0011-R5a-SM-5O9D7 23.8
GTEX-14BIN-0011-R5b-SM-5SI78 23.8
GTEX-13CIG-0011-R5b-SM-5L3F2 23.5
GTEX-13JVG-0011-R5a-SM-5MR4O 23.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 23.2
GTEX-144GO-0011-R5a-SM-5PNUR 23.1
GTEX-ZXG5-0011-R5b-SM-57WBN 23.1
GTEX-P44H-0011-R5A-SM-2XCEX 23.0
GTEX-ZUA1-0011-R5b-SM-51MTG 22.9
GTEX-139TS-0011-R5b-SM-5J2MZ 22.8
GTEX-NL4W-0011-R5a-SM-2I3GD 22.8
GTEX-1313W-0011-R5b-SM-5L3EP 22.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 22.6
GTEX-13O3O-0011-R5b-SM-5KM44 22.4
GTEX-13OW7-0011-R5b-SM-5O9DM 22.4
GTEX-S7SE-0011-R5A-SM-2XCDA 22.4
GTEX-12WSD-0011-R5b-SM-5CVNG 22.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 22.3
GTEX-NL3H-0011-R5a-SM-2I3GB 21.7
GTEX-XOTO-0011-R5A-SM-4B657 21.7
GTEX-144GL-0011-R5b-SM-5PNUJ 21.6
GTEX-Z93S-0011-R5b-SM-4RGNI 21.5
GTEX-ZV68-0011-R5a-SM-4YCDW 21.5
GTEX-13X6J-0011-R5b-SM-5PNWT 21.1
GTEX-11OF3-0011-R5a-SM-57WB4 20.7
GTEX-OHPN-0011-R5A-SM-2I5FF 20.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 20.7
GTEX-11NV4-0011-R5a-SM-5NQ88 20.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 20.2
GTEX-139T8-0011-R5b-SM-5J1MO 20.2
GTEX-11UD1-0011-R5b-SM-5P9FP 20.0
GTEX-11WQC-0011-R5a-SM-5BC74 19.9
GTEX-13FHP-0011-R5b-SM-5LZY2 19.9
GTEX-1445S-0011-R5a-SM-5PNUS 19.6
GTEX-RVPU-0011-R5A-SM-2XCAD 19.5
GTEX-PVOW-0011-R5A-SM-32PL7 19.2
GTEX-TSE9-0011-R5A-SM-3DB7J 19.2
GTEX-13112-0011-R5b-SM-5DUV8 18.9
GTEX-12WSA-0011-R5b-SM-5GU5I 18.8
GTEX-QMR6-0011-R5A-SM-32PKT 18.8
GTEX-ZVT3-0011-R5a-SM-51MSI 18.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 18.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 17.8
GTEX-YJ89-0011-R5a-SM-4V6GM 17.7
GTEX-12WSH-0011-R5b-SM-5P9F3 17.4
GTEX-139TT-0011-R5b-SM-5K7W8 17.3
GTEX-OXRN-0011-R5A-SM-2I5EF 16.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 16.0
GTEX-NPJ7-0011-R5a-SM-33HBK 16.0
GTEX-S7PM-0011-R5A-SM-3NM8G 15.4
GTEX-1477Z-0011-R5b-SM-5PNUO 15.3
GTEX-145MG-0011-R5b-SM-5S2VU 14.5
GTEX-T2IS-0011-R5A-SM-32QP4 13.7
GTEX-13CF2-0011-R5a-SM-5LZWS 13.6
GTEX-13NZA-0011-R5b-SM-5KM4K 10.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

60.9

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 60.9
FF:10164-103B2 76 years, female 63.0
FF:10379-105H1 89 years, female 58.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.