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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:41.0RPKM
FANTOM5:127.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Medium
 

Antibody staining

Antibody HPA039874

 

Antibody CAB014889

 

Antibody CAB026335

 

Glial cells

Low   Medium   Medium  

Neuronal cells

Medium   Medium   Medium  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

41.0

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 41.0
Samples: 117

Max RPKM: 64.2
Min RPKM: 18
Std RPKM: 8.3
Median RPKM: 42.1
GTEX-OHPN-0011-R5A-SM-2I5FF 64.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60.0
GTEX-11H98-0011-R5b-SM-57WCF 58.7
GTEX-X585-0011-R5A-SM-46MVI 57.7
GTEX-139TT-0011-R5b-SM-5K7W8 55.5
GTEX-12WSA-0011-R5b-SM-5GU5I 55.2
GTEX-13X6K-0011-R5b-SM-5PNUE 54.6
GTEX-T6MN-0011-R5A-SM-32QPD 54.3
GTEX-TSE9-0011-R5A-SM-3DB7J 52.6
GTEX-P44H-0011-R5A-SM-2XCEX 52.5
GTEX-QVJO-0011-R5A-SM-2S1QM 51.9
GTEX-ZUA1-0011-R5b-SM-51MTG 51.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 51.1
GTEX-N7MT-0011-R5a-SM-2I3G6 50.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 50.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 49.6
GTEX-13JUV-0011-R5a-SM-5LZY5 49.4
GTEX-14BIM-0011-R5b-SM-5S2RM 49.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 48.6
GTEX-1399T-0011-R5b-SM-5IJDK 48.6
GTEX-13G51-0011-R5a-SM-5L3EB 48.2
GTEX-12WSC-0011-R5b-SM-5CVNS 47.4
GTEX-13VXU-0011-R5a-SM-5O9D7 47.2
GTEX-13CZV-0011-R5a-SM-5K7XA 47.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 46.8
GTEX-12WSB-0011-R5b-SM-5GU67 46.2
GTEX-RVPV-0011-R5A-SM-2TF69 46.1
GTEX-131YS-0011-R5b-SM-5K7YB 46.0
GTEX-13NYB-0011-R5a-SM-5MR45 45.5
GTEX-XMD1-0011-R5A-SM-4AT47 45.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 45.2
GTEX-N7MS-0011-R5a-SM-2HMK8 45.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 44.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 44.7
GTEX-R55E-0011-R5A-SM-2TC5N 44.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 44.2
GTEX-139T8-0011-R5b-SM-5J1MO 44.1
GTEX-WWYW-0011-R5A-SM-3NB3E 44.1
GTEX-RU72-0011-R5A-SM-2TF6U 44.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 43.8
GTEX-13X6I-0011-R5a-SM-5PNWW 43.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 43.5
GTEX-S7SE-0011-R5A-SM-2XCDA 43.3
GTEX-11GSP-0011-R5a-SM-57WBE 43.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 43.2
GTEX-13FLW-0011-R5a-SM-5LZX6 43.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 43.1
GTEX-WVLH-0011-R5A-SM-3MJFW 43.0
GTEX-13OW6-0011-R5a-SM-5O9BK 42.9
GTEX-145MH-0011-R5a-SM-5P9JT 42.9
GTEX-NPJ7-0011-R5a-SM-33HBK 42.9
GTEX-T5JC-0011-R5A-SM-32PLK 42.8
GTEX-11NV4-0011-R5a-SM-5NQ88 42.7
GTEX-QMR6-0011-R5A-SM-32PKT 42.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 42.5
GTEX-13FXS-0011-R5b-SM-5LZYE 42.4
GTEX-13O3O-0011-R5b-SM-5KM44 42.3
GTEX-WZTO-0011-R5B-SM-3NMC5 42.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 42.1
GTEX-13FLV-0011-R5a-SM-5LZWT 42.1
GTEX-12WSF-0011-R5a-SM-5HL8K 41.9
GTEX-1313W-0011-R5b-SM-5L3EP 41.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 41.9
GTEX-13NYS-0011-R5a-SM-5MR4D 41.7
GTEX-13SLX-0011-R5a-SM-5O9BV 41.6
GTEX-13OVH-0011-R5b-SM-5KM4L 41.5
GTEX-RVPU-0011-R5A-SM-2XCAD 41.2
GTEX-14ABY-0011-R5b-SM-5SI7B 41.1
GTEX-13X6J-0011-R5b-SM-5PNWT 40.9
GTEX-WL46-0011-R5A-SM-3LK6V 40.2
GTEX-13JVG-0011-R5a-SM-5MR4O 39.4
GTEX-11OF3-0011-R5a-SM-57WB4 39.3
GTEX-145LS-0011-R5a-SM-5SI65 39.2
GTEX-X261-0011-R5A-SM-3NMB4 39.2
GTEX-UTHO-0011-R5A-SM-3GIJD 39.1
GTEX-144GO-0011-R5a-SM-5PNUR 38.7
GTEX-13OW5-0011-R5b-SM-5L3FR 38.2
GTEX-13S7M-0011-R5b-SM-5P9HS 38.2
GTEX-13OW7-0011-R5b-SM-5O9DM 38.1
GTEX-12WSD-0011-R5b-SM-5CVNG 37.9
GTEX-13OVL-0011-R5b-SM-5L3FU 37.9
GTEX-ZE7O-0011-R5a-SM-57WBO 37.1
GTEX-XOTO-0011-R5A-SM-4B657 37.0
GTEX-Z93S-0011-R5b-SM-4RGNI 37.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 37.0
GTEX-T2IS-0011-R5A-SM-32QP4 36.8
GTEX-YFC4-0011-R5a-SM-4RGLR 36.4
GTEX-12ZZX-0011-R5a-SM-5HL89 35.7
GTEX-X4XX-0011-R5A-SM-46MWN 35.7
GTEX-ZXG5-0011-R5b-SM-57WBN 35.4
GTEX-PVOW-0011-R5A-SM-32PL7 35.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 35.0
GTEX-NL4W-0011-R5a-SM-2I3GD 34.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 34.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 34.5
GTEX-139TS-0011-R5b-SM-5J2MZ 34.2
GTEX-ZVT3-0011-R5a-SM-51MSI 33.7
GTEX-13CIG-0011-R5b-SM-5L3F2 31.7
GTEX-14BIN-0011-R5b-SM-5SI78 31.6
GTEX-OXRN-0011-R5A-SM-2I5EF 31.2
GTEX-NL3H-0011-R5a-SM-2I3GB 30.8
GTEX-11WQC-0011-R5a-SM-5BC74 30.7
GTEX-1445S-0011-R5a-SM-5PNUS 30.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 30.5
GTEX-ZV68-0011-R5a-SM-4YCDW 29.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 29.4
GTEX-13112-0011-R5b-SM-5DUV8 28.9
GTEX-144GL-0011-R5b-SM-5PNUJ 27.9
GTEX-YJ89-0011-R5a-SM-4V6GM 27.2
GTEX-1477Z-0011-R5b-SM-5PNUO 27.0
GTEX-11UD1-0011-R5b-SM-5P9FP 26.5
GTEX-12WSH-0011-R5b-SM-5P9F3 25.4
GTEX-S7PM-0011-R5A-SM-3NM8G 25.2
GTEX-13CF2-0011-R5a-SM-5LZWS 24.9
GTEX-13FHP-0011-R5b-SM-5LZY2 24.8
GTEX-13NZA-0011-R5b-SM-5KM4K 21.1
GTEX-145MG-0011-R5b-SM-5S2VU 18.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

127.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 127.3
FF:10379-105H1 89 years, female 162.7
FF:10164-103B2 76 years, female 91.8

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