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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:21.3RPKM
FANTOM5:202.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Medium
 

Antibody staining

Antibody HPA001648

 

Antibody HPA005631

 

Antibody HPA059585

 

Glial cells

Not detected   Not detected   Medium  

Neuronal cells

Low   Not detected   Medium  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

21.3

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 21.3
Samples: 117

Max RPKM: 41.2
Min RPKM: 7.3
Std RPKM: 6.6
Median RPKM: 20.4
GTEX-T2IS-0011-R5A-SM-32QP4 41.2
GTEX-QVJO-0011-R5A-SM-2S1QM 40.6
GTEX-11GSP-0011-R5a-SM-57WBE 37.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 33.9
GTEX-12WSB-0011-R5b-SM-5GU67 33.8
GTEX-XMD1-0011-R5A-SM-4AT47 33.6
GTEX-131YS-0011-R5b-SM-5K7YB 33.5
GTEX-13JUV-0011-R5a-SM-5LZY5 33.4
GTEX-P44H-0011-R5A-SM-2XCEX 32.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 31.1
GTEX-PVOW-0011-R5A-SM-32PL7 30.0
GTEX-N7MT-0011-R5a-SM-2I3G6 29.8
GTEX-OHPN-0011-R5A-SM-2I5FF 29.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 29.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 29.4
GTEX-145LS-0011-R5a-SM-5SI65 29.4
GTEX-144GO-0011-R5a-SM-5PNUR 28.9
GTEX-13X6I-0011-R5a-SM-5PNWW 28.4
GTEX-WWYW-0011-R5A-SM-3NB3E 28.4
GTEX-132Q8-0011-R5a-SM-5IJDM 27.6
GTEX-X4XX-0011-R5A-SM-46MWN 27.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 26.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 26.4
GTEX-13O3O-0011-R5b-SM-5KM44 26.3
GTEX-QMR6-0011-R5A-SM-32PKT 26.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 26.1
GTEX-13OW6-0011-R5a-SM-5O9BK 25.5
GTEX-S7SE-0011-R5A-SM-2XCDA 25.4
GTEX-WVLH-0011-R5A-SM-3MJFW 25.3
GTEX-13SLX-0011-R5a-SM-5O9BV 25.1
GTEX-14BIM-0011-R5b-SM-5S2RM 25.1
GTEX-X585-0011-R5A-SM-46MVI 25.1
GTEX-UTHO-0011-R5A-SM-3GIJD 25.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 24.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 24.9
GTEX-12WSA-0011-R5b-SM-5GU5I 24.7
GTEX-NPJ7-0011-R5a-SM-33HBK 24.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 24.6
GTEX-13X6K-0011-R5b-SM-5PNUE 24.4
GTEX-11H98-0011-R5b-SM-57WCF 23.9
GTEX-ZE7O-0011-R5a-SM-57WBO 23.7
GTEX-N7MS-0011-R5a-SM-2HMK8 23.4
GTEX-RU72-0011-R5A-SM-2TF6U 23.2
GTEX-1313W-0011-R5b-SM-5L3EP 22.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 22.8
GTEX-TSE9-0011-R5A-SM-3DB7J 22.6
GTEX-13S7M-0011-R5b-SM-5P9HS 22.5
GTEX-YFC4-0011-R5a-SM-4RGLR 22.2
GTEX-12WSD-0011-R5b-SM-5CVNG 21.9
GTEX-WZTO-0011-R5B-SM-3NMC5 21.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 21.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 21.4
GTEX-11OF3-0011-R5a-SM-57WB4 21.3
GTEX-13G51-0011-R5a-SM-5L3EB 21.3
GTEX-13OW5-0011-R5b-SM-5L3FR 21.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 21.3
GTEX-T6MN-0011-R5A-SM-32QPD 20.7
GTEX-ZVT3-0011-R5a-SM-51MSI 20.7
GTEX-13OVL-0011-R5b-SM-5L3FU 20.4
GTEX-14ABY-0011-R5b-SM-5SI7B 20.3
GTEX-14BIN-0011-R5b-SM-5SI78 20.3
GTEX-1399T-0011-R5b-SM-5IJDK 20.1
GTEX-NL4W-0011-R5a-SM-2I3GD 20.1
GTEX-13X6J-0011-R5b-SM-5PNWT 19.9
GTEX-R55E-0011-R5A-SM-2TC5N 19.8
GTEX-X261-0011-R5A-SM-3NMB4 19.8
GTEX-12WSF-0011-R5a-SM-5HL8K 19.6
GTEX-139TS-0011-R5b-SM-5J2MZ 19.3
GTEX-1445S-0011-R5a-SM-5PNUS 19.3
GTEX-WL46-0011-R5A-SM-3LK6V 19.3
GTEX-13NYS-0011-R5a-SM-5MR4D 19.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 19.2
GTEX-RVPU-0011-R5A-SM-2XCAD 19.2
GTEX-13OW7-0011-R5b-SM-5O9DM 18.8
GTEX-RVPV-0011-R5A-SM-2TF69 18.8
GTEX-13FLV-0011-R5a-SM-5LZWT 18.6
GTEX-13JVG-0011-R5a-SM-5MR4O 18.2
GTEX-13VXU-0011-R5a-SM-5O9D7 18.1
GTEX-145MH-0011-R5a-SM-5P9JT 17.8
GTEX-NL3H-0011-R5a-SM-2I3GB 17.8
GTEX-ZXG5-0011-R5b-SM-57WBN 17.7
GTEX-12WSC-0011-R5b-SM-5CVNS 17.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 17.1
GTEX-11WQC-0011-R5a-SM-5BC74 16.8
GTEX-139TT-0011-R5b-SM-5K7W8 16.7
GTEX-12ZZX-0011-R5a-SM-5HL89 16.6
GTEX-11UD1-0011-R5b-SM-5P9FP 16.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 16.4
GTEX-XOTO-0011-R5A-SM-4B657 16.4
GTEX-T5JC-0011-R5A-SM-32PLK 16.2
GTEX-13CZV-0011-R5a-SM-5K7XA 16.1
GTEX-13OVH-0011-R5b-SM-5KM4L 16.1
GTEX-13FXS-0011-R5b-SM-5LZYE 16.0
GTEX-13FLW-0011-R5a-SM-5LZX6 15.8
GTEX-OXRN-0011-R5A-SM-2I5EF 15.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 15.6
GTEX-11NV4-0011-R5a-SM-5NQ88 15.3
GTEX-ZUA1-0011-R5b-SM-51MTG 15.3
GTEX-ZV68-0011-R5a-SM-4YCDW 15.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 14.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 14.8
GTEX-S7PM-0011-R5A-SM-3NM8G 14.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 14.3
GTEX-Z93S-0011-R5b-SM-4RGNI 14.2
GTEX-13112-0011-R5b-SM-5DUV8 13.9
GTEX-13CIG-0011-R5b-SM-5L3F2 13.9
GTEX-13NYB-0011-R5a-SM-5MR45 13.4
GTEX-144GL-0011-R5b-SM-5PNUJ 13.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 12.6
GTEX-1477Z-0011-R5b-SM-5PNUO 11.6
GTEX-13CF2-0011-R5a-SM-5LZWS 11.5
GTEX-139T8-0011-R5b-SM-5J1MO 11.3
GTEX-13FHP-0011-R5b-SM-5LZY2 10.8
GTEX-YJ89-0011-R5a-SM-4V6GM 10.5
GTEX-13NZA-0011-R5b-SM-5KM4K 8.3
GTEX-145MG-0011-R5b-SM-5S2VU 8.1
GTEX-12WSH-0011-R5b-SM-5P9F3 7.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

202.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 202.2
FF:10379-105H1 89 years, female 217.0
FF:10164-103B2 76 years, female 187.4

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