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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:122.4TPM
GTEx:22.7RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glial cells:Medium
Neuronal cells:High
Neuropil:Not detected
 

Antibody staining

Antibody HPA001648

 

Antibody HPA005631

 

Antibody HPA059585

 

Endothelial cells

Low   Not detected   Medium  

Glial cells

Not detected   Low   Medium  

Neuronal cells

Low   Medium   High  

Neuropil

Not detected   Not detected   Not detected  
     
     
     

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

122.4

N/A Male, age 5
Sample 1
TPM: 90.9
overview Female, age 40
Sample 2
TPM: 173.4
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 103.1
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

22.7

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 21.7
Samples: 114

Max RPKM: 35.3
Min RPKM: 11.4
Std RPKM: 4.8
Median RPKM: 21.5
GTEX-QMR6-1426-SM-32PLA 35.3
GTEX-TSE9-3026-SM-3DB76 35.1
GTEX-QVJO-1426-SM-2S1QY 32.4
GTEX-QVUS-2826-SM-3GADB 32.2
GTEX-QDT8-2926-SM-32PKC 32.1
GTEX-13OVJ-2826-SM-5L3GW 31.2
GTEX-UTHO-3026-SM-3GAFB 31.1
GTEX-ZAK1-3026-SM-5S2MJ 30.5
GTEX-RNOR-2326-SM-2TF4I 29.0
GTEX-PVOW-2526-SM-2XCF7 28.3
GTEX-1128S-2726-SM-5H12C 28.0
GTEX-11GSP-3226-SM-5986O 27.9
GTEX-13X6K-2926-SM-5Q5D5 27.9
GTEX-132Q8-3026-SM-5PNVG 27.2
GTEX-145LS-3126-SM-5Q5BY 27.2
GTEX-X4XX-3026-SM-3NMB2 26.7
GTEX-13FHO-3026-SM-5J1O9 26.2
GTEX-PWO3-0926-SM-2I5EY 26.2
GTEX-144FL-3026-SM-5O99C 25.6
GTEX-1192X-3126-SM-5N9BY 25.5
GTEX-YFC4-3126-SM-5PNV6 25.5
GTEX-T2IS-3026-SM-32QPM 25.4
GTEX-WZTO-2926-SM-3NM9I 25.4
GTEX-ZZPT-3026-SM-5GZXH 25.4
GTEX-13JVG-3126-SM-5L3FH 25.3
GTEX-XLM4-3026-SM-4AT6L 25.3
GTEX-11NUK-2926-SM-5A5MD 25.0
GTEX-NPJ7-2726-SM-2I3FT 24.9
GTEX-13JUV-2926-SM-5LZX7 24.8
GTEX-14A5I-2926-SM-5Q5CQ 24.4
GTEX-13QIC-2926-SM-5J2NF 24.2
GTEX-11OF3-2926-SM-5HL78 23.9
GTEX-13S7M-3126-SM-5RQJQ 23.9
GTEX-RU72-3026-SM-5SI7Y 23.7
GTEX-13O3O-3126-SM-5KM3H 23.6
GTEX-WWYW-3126-SM-3NB39 23.5
GTEX-ZVT3-3026-SM-5E43N 23.5
GTEX-131YS-3126-SM-5KLYT 23.4
GTEX-11TTK-2926-SM-5PNYP 23.2
GTEX-13NYS-3126-SM-5KLYV 23.2
GTEX-12WSA-2926-SM-5EQ4D 23.1
GTEX-12ZZZ-3026-SM-5BC67 23.1
GTEX-X585-3026-SM-46MWF 23.0
GTEX-14BMV-3026-SM-5S2PQ 22.8
GTEX-11DXY-3226-SM-5GIDE 22.6
GTEX-14ASI-3026-SM-5S2PN 22.6
GTEX-12WSD-3126-SM-5HL7P 22.5
GTEX-N7MT-1126-SM-5SI7V 22.5
GTEX-Q2AG-2926-SM-2HMJ3 22.4
GTEX-11WQK-3026-SM-5EQL6 22.3
GTEX-1313W-3126-SM-5LZUI 22.2
GTEX-13SLX-3126-SM-5S2Q5 22.0
GTEX-12ZZX-2926-SM-5GCOQ 21.9
GTEX-13OVH-3026-SM-5MR4N 21.9
GTEX-13OW6-3026-SM-5J2MI 21.8
GTEX-WHSE-3026-SM-3P5ZH 21.7
GTEX-1399T-3026-SM-5KLZC 21.5
GTEX-13FXS-3126-SM-5J2NN 21.5
GTEX-11GSO-2926-SM-5HL73 21.4
GTEX-145MH-3026-SM-5Q5DZ 21.2
GTEX-11PRG-2926-SM-5987A 21.1
GTEX-NPJ8-1526-SM-2D7VU 21.0
GTEX-111FC-3126-SM-5GZZ2 20.8
GTEX-11OC5-0726-SM-5P9JK 20.7
GTEX-11EMC-3226-SM-5EGKW 20.3
GTEX-139T8-1026-SM-5J2MC 20.3
GTEX-WVLH-3026-SM-3MJG9 20.1
GTEX-XOTO-3026-SM-4B65M 20.1
GTEX-ZUA1-3026-SM-59HJC 20.1
GTEX-131XW-3126-SM-5LZUC 20.0
GTEX-11ONC-2926-SM-5P9JM 19.6
GTEX-13PL6-3126-SM-5LUAR 19.6
GTEX-T6MN-2626-SM-32PMQ 19.6
GTEX-13PVQ-3026-SM-5SI93 19.5
GTEX-WL46-2926-SM-3LK82 19.5
GTEX-13VXU-2926-SM-5LU5C 19.4
GTEX-11O72-2926-SM-5BC4V 19.2
GTEX-Y8DK-0826-SM-4TT3T 19.2
GTEX-13X6J-3026-SM-5Q5CU 19.1
GTEX-11EI6-3026-SM-5GZZO 18.8
GTEX-ZE7O-3126-SM-5HL5X 18.8
GTEX-145MF-2726-SM-5O995 18.5
GTEX-13FHP-3026-SM-5IJBS 18.4
GTEX-13NYC-2826-SM-5K7WR 18.4
GTEX-144GL-3026-SM-5Q5CW 18.4
GTEX-13G51-3026-SM-5IJB8 18.3
GTEX-13IVO-2926-SM-5L3CZ 18.2
GTEX-13O3Q-2926-SM-5KM45 17.9
GTEX-ZYFD-3026-SM-5E44C 17.8
GTEX-11DXW-1126-SM-5H12Q 17.7
GTEX-13OW7-3026-SM-5L3GY 17.6
GTEX-ZAJG-3126-SM-5HL9J 17.6
GTEX-12ZZY-3026-SM-5GCOU 17.5
GTEX-12WSC-3026-SM-5GCNF 17.4
GTEX-13OW8-2826-SM-5L3GC 17.4
GTEX-R55F-1326-SM-5S2V4 17.4
GTEX-13FLW-1426-SM-5K7YE 16.8
GTEX-117XS-3026-SM-5N9CA 16.5
GTEX-12126-1026-SM-5P9JJ 16.4
GTEX-OXRN-2426-SM-2I5EQ 16.2
GTEX-13NYB-3026-SM-5IJD7 15.9
GTEX-11ZUS-2926-SM-5FQSL 15.8
GTEX-1445S-3026-SM-5O9BR 15.8
GTEX-145MG-3026-SM-5RQJA 15.8
GTEX-1117F-3226-SM-5N9CT 15.4
GTEX-12ZZW-2926-SM-5LZUP 15.4
GTEX-Y111-2726-SM-4TT3N 15.0
GTEX-YJ89-3026-SM-5IFJI 14.8
GTEX-T5JC-2426-SM-3NMDB 14.7
GTEX-11GS4-3126-SM-5A5LH 14.4
GTEX-Z93S-2926-SM-57WB9 13.9
GTEX-12WSH-3026-SM-5CVNI 13.3
GTEX-11NV4-2126-SM-5N9DS 11.5
GTEX-147GR-3026-SM-5S2ML 11.4
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 23.8
Samples: 108

Max RPKM: 60.9
Min RPKM: 10.5
Std RPKM: 7.9
Median RPKM: 22.1
GTEX-QDT8-0011-R10A-SM-32PKG 60.9
GTEX-QVUS-0011-R10A-SM-3GIK3 49.2
GTEX-QVJO-0011-R10A-SM-2S1QJ 46.7
GTEX-Q2AG-0011-R10A-SM-2HMLA 39.9
GTEX-QMR6-0011-R10A-SM-32PKO 39.3
GTEX-13OVJ-0011-R10b-SM-5L3HT 38.8
GTEX-NPJ7-0011-R10A-SM-2I3E5 37.7
GTEX-X4EP-0011-R10B-SM-4QASJ 37.3
GTEX-WVLH-0011-R10A-SM-3MJFM 32.8
GTEX-13X6K-0011-R10a-SM-5P9JR 32.7
GTEX-13N2G-0011-R10a-SM-5MR34 32.5
GTEX-P44H-0011-R10A-SM-2XCEK 32.5
GTEX-T6MN-0011-R10A-SM-32QP7 32.3
GTEX-YFC4-0011-R10a-SM-4SOK5 32.3
GTEX-WWYW-0011-R10A-SM-3NB35 32.0
GTEX-131YS-0011-R10b-SM-5EQ5N 31.8
GTEX-S7SE-0011-R10A-SM-2XCDF 31.7
GTEX-13JUV-0011-R10b-SM-5LZXR 31.0
GTEX-TSE9-0011-R10A-SM-3DB7O 30.7
GTEX-13S7M-0011-R10b-SM-5PNZB 29.9
GTEX-12ZZX-0011-R10b-SM-5DUWK 29.6
GTEX-WL46-0011-R10A-SM-3MJFQ 29.5
GTEX-XLM4-0011-R10A-SM-4AT5P 29.1
GTEX-13QIC-0011-R10a-SM-5O9C7 28.5
GTEX-X585-0011-R10A-SM-46MUY 28.5
GTEX-1313W-0011-R10b-SM-5DUXA 28.0
GTEX-13FHO-0011-R10b-SM-5J2MM 27.9
GTEX-X4XX-0011-R10B-SM-46MWO 27.9
GTEX-11ZUS-0011-R10b-SM-5BC79 27.7
GTEX-11GSP-0011-R10a-SM-5NQ7J 27.1
GTEX-145LS-0011-R10a-SM-5PNUQ 26.8
GTEX-145MH-0011-R10b-SM-5PNUK 26.5
GTEX-12WSM-0011-R10a-SM-5DUWV 26.3
GTEX-132Q8-0011-R10b-SM-5DUWZ 26.1
GTEX-11H98-0011-R10b-SM-5NQ98 25.7
GTEX-ZVZQ-0011-R10b-SM-51MRT 25.6
GTEX-12WSE-0011-R10b-SM-5P9JV 25.4
GTEX-N7MT-0011-R10A-SM-2I3E1 25.1
GTEX-13QJC-0011-R10a-SM-5SI63 24.9
GTEX-13SLW-0011-R10a-SM-5S2UI 24.2
GTEX-13X6I-0011-R10a-SM-5PNWI 24.1
GTEX-WZTO-0011-R10B-SM-4E3KB 24.1
GTEX-Y8DK-0011-R10A-SM-4SOK1 23.9
GTEX-13OW8-0011-R10a-SM-5L3H6 23.5
GTEX-145MG-0011-R10a-SM-5PNWG 23.3
GTEX-14BIN-0011-R10a-SM-5S2UA 23.1
GTEX-N7MS-0011-R10A-SM-2HMJK 23.0
GTEX-ZAB4-0011-R10a-SM-4SOKH 22.9
GTEX-13X6J-0011-R10b-SM-5PNWA 22.8
GTEX-13O3Q-0011-R10b-SM-5KM39 22.6
GTEX-XMD1-0011-R10A-SM-4AT4A 22.5
GTEX-NPJ8-0011-R10A-SM-2YUMO 22.3
GTEX-ZUA1-0011-R10a-SM-51MT6 22.3
GTEX-13OVL-0011-R10a-SM-5L3GS 22.1
GTEX-NL3H-0011-R10A-SM-2I3E9 22.1
GTEX-1445S-0011-R10a-SM-5PNWB 21.9
GTEX-T5JC-0011-R10A-SM-32PM2 21.8
GTEX-13FLW-0011-R10b-SM-5LZZF 21.5
GTEX-14ASI-0011-R10b-SM-5S2VZ 21.5
GTEX-YJ89-0011-R10a-SM-4SOK9 21.5
GTEX-ZDXO-0011-R10a-SM-4WWD8 21.5
GTEX-12WSA-0011-R10b-SM-5P9ET 21.4
GTEX-12WSF-0011-R10a-SM-5LZVH 21.3
GTEX-ZVT3-0011-R10b-SM-57WB6 21.0
GTEX-11WQK-0011-R10a-SM-5BC6R 20.9
GTEX-14BIL-0011-R10a-SM-5SI75 20.8
GTEX-13FLV-0011-R10b-SM-5LZZ2 20.7
GTEX-13RTJ-0011-R10b-SM-5O9CW 20.7
GTEX-13SLX-0011-R10a-SM-5P9HV 20.5
GTEX-12126-0011-R10b-SM-5BC6T 20.4
GTEX-13N1W-0011-R10b-SM-5MR4H 20.2
GTEX-12WSD-0011-R10b-SM-5GU79 20.0
GTEX-131XH-0011-R10a-SM-5EGLJ 19.7
GTEX-13CZV-0011-R10b-SM-5LZYD 19.7
GTEX-13FXS-0011-R10a-SM-5J2MA 19.7
GTEX-ZF28-0011-R10a-SM-4WWEH 19.7
GTEX-13G51-0011-R10b-SM-5LZYF 19.6
GTEX-13O3O-0011-R10a-SM-5LUA9 19.5
GTEX-12ZZY-0011-R10b-SM-5HL7W 19.3
GTEX-12ZZZ-0011-R10a-SM-5P9HC 19.1
GTEX-OXRN-0011-R10A-SM-2I5GC 19.0
GTEX-145LU-0011-R10a-SM-5PNWJ 18.7
GTEX-13NYB-0011-R10a-SM-5KM43 18.6
GTEX-12WSC-0011-R10a-SM-5GU57 18.2
GTEX-13OW6-0011-R10a-SM-5L3HE 18.1
GTEX-ZE7O-0011-R10a-SM-57WAZ 18.0
GTEX-147F4-0011-R10b-SM-5S2WC 17.9
GTEX-NL4W-0011-R10A-SM-2I3DY 17.6
GTEX-X261-0011-R10B-SM-4E3JT 17.4
GTEX-13JVG-0011-R10b-SM-5KM2P 17.3
GTEX-147GR-0011-R10b-SM-5S2UM 17.1
GTEX-13FTZ-0011-R10b-SM-5KLZS 16.8
GTEX-14753-0011-R10b-SM-5S2WE 16.1
GTEX-11WQC-0011-R10a-SM-57WCT 15.9
GTEX-Z93S-0011-R10a-SM-4RGNM 15.9
GTEX-139TS-0011-R10a-SM-5K7TU 15.6
GTEX-13OW7-0011-R10a-SM-5L3H3 15.6
GTEX-12ZZW-0011-R10b-SM-5HL9X 15.5
GTEX-13NYS-0011-R10a-SM-5MR4S 15.5
GTEX-1477Z-0011-R10b-SM-5S2RF 15.0
GTEX-ZV68-0011-R10a-SM-51MT7 14.9
GTEX-12WSH-0011-R10a-SM-5LZUS 14.4
GTEX-RVPU-0011-R10A-SM-2XCAH 13.9
GTEX-ZXG5-0011-R10a-SM-57WDD 13.3
GTEX-OXRO-0011-R10A-SM-2I5EH 13.0
GTEX-131XW-0011-R10a-SM-5DUVA 12.0
GTEX-13IVO-0011-R10a-SM-5LZY3 11.4
GTEX-13NZA-0011-R10b-SM-5KM54 10.5
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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