Tissue expression of PRRT4 - Summary - The Human Protein Atlas

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PRRT4

TISSUE

CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	PRRT4
Gene description	Proline-rich transmembrane protein 4
Protein class	Predicted intracellular proteins Predicted membrane proteins Predicted secreted proteins
Predicted localization	Intracellular,Membrane,Secreted
Number of transcripts	7
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Group enriched (bone marrow, adipose tissue)
GTEx:	Tissue enhanced (adipose tissue)
FANTOM5:	Tissue enhanced (appendix)

Protein evidence

Evidence at protein level

Protein expression

Estimation of protein expression could not be performed. View primary data.

DATA RELIABILITY
Data reliability description	RNA-based expert annotation gave inconclusive results. Pending external verification.
Reliability score	Uncertain based on 2 antibodies. HPA046373 , HPA052681
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

N/A

Caudate

N/A

N/A

Cerebellum

N/A

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

N/A

Bronchus

N/A

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

N/A

Skin

N/A

Skin

N/A

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
RNA-based expert annotation could not be performed, due to inconclusive results. View immunohistochemistry primary data.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Group enriched (bone marrow, adipose tissue)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (adipose tissue)
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (appendix)

GENE INFORMATION
Gene name	PRRT4
Synonyms
Description	Proline-rich transmembrane protein 4 (HGNC Symbol)
Entrez gene summary
Chromosome	7
Cytoband	q32.1
Chromosome location (bp)	128350325 - 128361685
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000224940 (version 83.38)
Entrez gene	401399
UniProt	C9JH25 (UniProt - Evidence at transcript level)
neXtProt	NX_C9JH25
Antibodypedia	PRRT4 antibodies

PROTEIN BROWSER

PRRT4-001	PRRT4-002	PRRT4-003	PRRT4-004	PRRT4-005	PRRT4-201	PRRT4-202

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
PRRT4-001 ENSP00000419296 ENST00000489835	C9JH25 [Direct mapping] Proline-rich transmembrane protein 4 Show all	Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Show all	GO:0016021 [integral component of membrane] Show all	429 aa 44.6 kDa	Yes	0
PRRT4-002 ENSP00000419282 ENST00000489517	C9JVX5 [Direct mapping] Proline-rich transmembrane protein 4 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 4TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	480 aa 49.7 kDa	Yes	4
PRRT4-003 ENSP00000417878 ENST00000480290	H7C4Q3 [Direct mapping] Proline-rich transmembrane protein 4 Show all	Predicted intracellular proteins Show all		419 aa 43.7 kDa	No	0
PRRT4-004 ENSP00000419221 ENST00000495931	C9JWH6 [Direct mapping] Proline-rich transmembrane protein 4 Show all	Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Show all		205 aa 21.4 kDa	Yes	0
PRRT4-005 ENSP00000420155 ENST00000464607	C9JQT1 [Direct mapping] Proline-rich transmembrane protein 4 Show all	Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Show all		208 aa 21.7 kDa	Yes	0
PRRT4-201 ENSP00000415026 ENST00000446477	C9JH25 [Direct mapping] Proline-rich transmembrane protein 4 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 6TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	899 aa 92.7 kDa	Yes	6
PRRT4-202 ENSP00000445239 ENST00000535159	C9JH25 [Direct mapping] Proline-rich transmembrane protein 4 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 6TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	899 aa 92.7 kDa	Yes	6

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.