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Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA019527

 

Antibody HPA020912

 

Antibody CAB001809

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  DakoCytomation
 

Product name

HPA019527   HPA020912   M3616  

Host species

Rabbit   Rabbit   Rabbit  

Clonality

pAb   pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Supernatant  

Other gene match

     

Released in version

7   7   1  

References

     

VALIDATION SUMMARY

 
 

Antibody HPA019527

 

Antibody HPA020912

 

Antibody CAB001809

 
Immunocytochemistry

  Supported    
Immunohistochemistry


Validated

Validated
 

Validated

Validated
 

Validated
 
Western blot

Supported   Supported   Supported  
Protein array

Supported   Supported    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA019527

 

Antibody HPA020912

 

Antibody CAB001809

 

Standard validation

  Supported    

     

Figure description

  Immunofluorescent staining of human cell line A-431 shows localization to plasma membrane & vesicles.    

Antibody dilution

  1:100    

Literature conformity

  The subcellular location is supported by literature.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA019527

 

Antibody HPA020912

 

Antibody CAB001809

 

Formal validation: Orthogonal

Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 

 

 

 
 

 

 
 

 

 

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.  
 

Formal validation: Independent

Validated

Pearson correlation >0.6 for protein expression in cell lines using independent antibodies.
 
Validated

Pearson correlation >0.6 for protein expression in cell lines using independent antibodies.
   

 

 
 

   

Figure description

Distribution of protein expression (antibody staining).
Pearson correlation with HPA020912 across 46 cell lines.
  Distribution of protein expression (antibody staining).
Pearson correlation with HPA019527 across 46 cell lines.
   
 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunohistochemical staining of human kidney shows strong cytoplasmic positivity in tubular cells.   Immunohistochemical staining of human kidney shows strong cytoplasmic positivity in cells of tubules.   Immunohistochemical staining of human kidney shows moderate cytoplasmic positivity in subsets of renal tubuli.  

Expression

RNA: detected in 37 tissues
Protein: detected in 26 cell types
  RNA: detected in 37 tissues
Protein: detected in 14 cell types
  RNA: detected in 37 tissues
Protein: detected in 3 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:5000   1:250   1:100  

Literature conformity

Partly consistent with extensive gene/protein characterization data.   Partly consistent with extensive gene/protein characterization data.   Partly consistent with extensive gene/protein characterization data.  

RNA consistency

Mainly consistent with RNA expression data.   Mainly consistent with RNA expression data.   Mainly consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA019527

 

Antibody HPA020912

 

Antibody CAB001809

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Supported

Analysis performed using a standard panel of samples.
Single band corresponding to the predicted size in kDa (+/-20%).
 

     

Figure description

Lane 1: Marker [kDa] 230, 130, 95, 72, 56, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 230, 130, 95, 72, 56, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

43.9, 42.4, 40.7   43.9, 42.4, 40.7   43.9, 42.4, 40.7, 31.7, 30.8, 28.5, 22.2  

Antibody dilution

1:250   1:250   1:500  

PROTEIN ARRAY

 
 

Antibody HPA019527

 

Antibody HPA020912

 

Antibody CAB001809

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:3000   1:500    

ANTIGEN INFORMATION

 
 

Antibody HPA019527

 

Antibody HPA020912

 

Antibody CAB001809

 

Antigen

Recombinant protein fragment   Recombinant protein fragment   Recombinant protein  

Length (aa)

75   84    

Antigen sequence

HNKERGSFITSEEQDVSPRPAPLLLNTPAIPSFKRDPFIGEHTEEILEEF
GFSREEIYQLNSDKIIESNKVKASL
 
APFYTTYRTADGEFMAVGAIEPQFYELLIKGLGLKSDELPNQMSMDDWPE
MKKKFADVFAKKTKAEWCQIFDGTDACVTPVLTF
   

Matching transcripts

AMACR-001 - ENSP00000334424 [100%]
AMACR-003 - ENSP00000424351 [100%]
AMACR-008 - ENSP00000371517 [93%]
  AMACR-001 - ENSP00000334424 [99%]
AMACR-003 - ENSP00000424351 [99%]
AMACR-008 - ENSP00000371517 [99%]
   

Other gene match

     
ANTIGEN VIEW
AMACR-001
AMACR-003
AMACR-008
 

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