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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ATP5J2-PTCD1
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA020106

 

Antibody HPA047679

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
 

Product name

HPA020106   HPA047679  

Host species

Rabbit   Rabbit  

Clonality

pAb   pAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand  

Other gene match

PTCD1 - ENSG00000106246 [100%]
  PTCD1 - ENSG00000106246 [100%]
 

Released in version

5   12  

References

   

VALIDATION SUMMARY

 
 

Antibody HPA020106

 

Antibody HPA047679

 
Immunocytochemistry

  Approved  
Immunohistochemistry

Uncertain   Uncertain  
Western blot

Supported   Uncertain  
Protein array

Supported   Approved  

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA020106

 

Antibody HPA047679

 

Standard validation

  Approved  

   

Figure description

  Immunofluorescent staining of human cell line CACO-2 shows localization to mitochondria.  

Antibody dilution

  1:46  

Literature conformity

  The subcellular location is partly supported by literature or no literature is available.  

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA020106

 

Antibody HPA047679

 

Standard validation

Uncertain   Uncertain  

   

Figure description

Immunohistochemical staining of human placenta shows strong cytoplasmic positivity in trophoblastic cells.   Immunohistochemical staining of human testis shows strong cytoplasmic positivity.  

Expression

RNA: detected in 34 tissues
Protein: detected in 67 cell types
  RNA: detected in 34 tissues
Protein: detected in 33 cell types
 

Retrieval

HIER pH6   HIER pH6  

Antibody dilution

1:125   1:75  

Literature conformity

No avaliable gene/protein characterization data.   No avaliable gene/protein characterization data.  

RNA consistency

Mainly not consistent with RNA expression data.   Mainly not consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA020106

 

Antibody HPA047679

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Uncertain

Analysis performed using a standard panel of samples.
Single band differing more than +/-20% from predicted size in kDa and not supported by experimental and/or bioinformatic data.
 

   

Figure description

Lane 1: Marker [kDa] 230, 130, 95, 72, 56, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

84.1, 78.9   84.1, 78.9  

Antibody dilution

1:250   1:100  

PROTEIN ARRAY

 
 

Antibody HPA020106

 

Antibody HPA047679

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
 

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.  

Antibody dilution

1:3000   1:1800  

ANTIGEN INFORMATION

 
 

Antibody HPA020106

 

Antibody HPA047679

 

Antigen

Recombinant protein fragment   Recombinant protein fragment  

Length (aa)

103   126  

Antigen sequence

PVELEVNLLTPGAVPPTVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQ
PDIRTLTLLAEVVESGSPAESLLLALLDEHQVEADLTFFNTLVRKKSKLG
DLE
 
GLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPV
NEVVIRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQWLTVMPAEET
PHPWQKFRTKPQGDQDTGKEADDGCA
 

Matching transcripts

ATP5J2-PTCD1-001 - ENSP00000400168 [100%]
  ATP5J2-PTCD1-001 - ENSP00000400168 [100%]
 

Other gene match

PTCD1 - ENSG00000106246 [100%]
  PTCD1 - ENSG00000106246 [100%]
 
ANTIGEN VIEW
ATP5J2-PTCD1-001
 

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.