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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Neuronal cells: 35 Glial cells and endothelial cells: 65
Male, age 70
Sample 3 TPM: 68.0
Cell types%
Neuronal cells: 35 Glial cells and endothelial cells: 65
CEREBRAL CORTEX - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 27.2
Min RPKM: 4.8
Std RPKM: 4
Median RPKM: 12.3
GTEX-13NYC-2826-SM-5K7WR
27.2
GTEX-11OF3-2926-SM-5HL78
26.9
GTEX-X585-3026-SM-46MWF
23.9
GTEX-13FXS-3126-SM-5J2NN
22.6
GTEX-UTHO-3026-SM-3GAFB
21.9
GTEX-PVOW-2526-SM-2XCF7
21.5
GTEX-13X6K-2926-SM-5Q5D5
19.5
GTEX-131YS-3126-SM-5KLYT
19.4
GTEX-QVJO-1426-SM-2S1QY
18.8
GTEX-13FHO-3026-SM-5J1O9
18.0
GTEX-X4XX-3026-SM-3NMB2
18.0
GTEX-XLM4-3026-SM-4AT6L
18.0
GTEX-QMR6-1426-SM-32PLA
17.8
GTEX-T2IS-3026-SM-32QPM
17.1
GTEX-WZTO-2926-SM-3NM9I
16.9
GTEX-WL46-2926-SM-3LK82
16.8
GTEX-NPJ8-1526-SM-2D7VU
16.7
GTEX-WHSE-3026-SM-3P5ZH
16.5
GTEX-11NUK-2926-SM-5A5MD
16.1
GTEX-RNOR-2326-SM-2TF4I
15.8
GTEX-T5JC-2426-SM-3NMDB
15.8
GTEX-11DXY-3226-SM-5GIDE
15.7
GTEX-WWYW-3126-SM-3NB39
15.7
GTEX-14A5I-2926-SM-5Q5CQ
15.6
GTEX-QDT8-2926-SM-32PKC
15.6
GTEX-ZUA1-3026-SM-59HJC
15.6
GTEX-WVLH-3026-SM-3MJG9
15.4
GTEX-ZAK1-3026-SM-5S2MJ
15.4
GTEX-145MH-3026-SM-5Q5DZ
15.3
GTEX-13NYS-3126-SM-5KLYV
14.7
GTEX-TSE9-3026-SM-3DB76
14.4
GTEX-139T8-1026-SM-5J2MC
14.3
GTEX-Y8DK-0826-SM-4TT3T
14.3
GTEX-YFC4-3126-SM-5PNV6
14.3
GTEX-12ZZX-2926-SM-5GCOQ
14.2
GTEX-R55F-1326-SM-5S2V4
14.2
GTEX-Z93S-2926-SM-57WB9
14.2
GTEX-111FC-3126-SM-5GZZ2
13.8
GTEX-1192X-3126-SM-5N9BY
13.7
GTEX-14ASI-3026-SM-5S2PN
13.7
GTEX-NPJ7-2726-SM-2I3FT
13.7
GTEX-11ZUS-2926-SM-5FQSL
13.6
GTEX-13FLW-1426-SM-5K7YE
13.6
GTEX-13O3Q-2926-SM-5KM45
13.6
GTEX-145LS-3126-SM-5Q5BY
13.6
GTEX-144GL-3026-SM-5Q5CW
13.3
GTEX-QVUS-2826-SM-3GADB
13.3
GTEX-14BMV-3026-SM-5S2PQ
13.2
GTEX-11DXW-1126-SM-5H12Q
13.1
GTEX-11NV4-2126-SM-5N9DS
13.1
GTEX-RU72-3026-SM-5SI7Y
13.1
GTEX-ZE7O-3126-SM-5HL5X
13.1
GTEX-131XW-3126-SM-5LZUC
13.0
GTEX-13PL6-3126-SM-5LUAR
12.8
GTEX-1313W-3126-SM-5LZUI
12.7
GTEX-11PRG-2926-SM-5987A
12.6
GTEX-13FHP-3026-SM-5IJBS
12.4
GTEX-ZYFD-3026-SM-5E44C
12.3
GTEX-13OVJ-2826-SM-5L3GW
12.2
GTEX-117XS-3026-SM-5N9CA
12.1
GTEX-YJ89-3026-SM-5IFJI
12.0
GTEX-13SLX-3126-SM-5S2Q5
11.9
GTEX-145MG-3026-SM-5RQJA
11.7
GTEX-11EI6-3026-SM-5GZZO
11.6
GTEX-12ZZY-3026-SM-5GCOU
11.6
GTEX-11GSO-2926-SM-5HL73
11.5
GTEX-13OW6-3026-SM-5J2MI
11.5
GTEX-12126-1026-SM-5P9JJ
11.4
GTEX-T6MN-2626-SM-32PMQ
11.4
GTEX-12WSH-3026-SM-5CVNI
11.1
GTEX-12ZZZ-3026-SM-5BC67
11.1
GTEX-13NYB-3026-SM-5IJD7
11.1
GTEX-ZAJG-3126-SM-5HL9J
11.1
GTEX-11WQK-3026-SM-5EQL6
11.0
GTEX-ZVT3-3026-SM-5E43N
11.0
GTEX-13VXU-2926-SM-5LU5C
10.9
GTEX-13OVH-3026-SM-5MR4N
10.7
GTEX-13QIC-2926-SM-5J2NF
10.7
GTEX-Y111-2726-SM-4TT3N
10.7
GTEX-132Q8-3026-SM-5PNVG
10.6
GTEX-1128S-2726-SM-5H12C
10.5
GTEX-13X6J-3026-SM-5Q5CU
10.5
GTEX-Q2AG-2926-SM-2HMJ3
10.5
GTEX-1399T-3026-SM-5KLZC
10.4
GTEX-13S7M-3126-SM-5RQJQ
10.4
GTEX-XOTO-3026-SM-4B65M
10.4
GTEX-12WSC-3026-SM-5GCNF
10.3
GTEX-13G51-3026-SM-5IJB8
10.3
GTEX-OXRN-2426-SM-2I5EQ
10.3
GTEX-N7MT-1126-SM-5SI7V
10.1
GTEX-11OC5-0726-SM-5P9JK
9.9
GTEX-13O3O-3126-SM-5KM3H
9.5
GTEX-12ZZW-2926-SM-5LZUP
9.4
GTEX-145MF-2726-SM-5O995
9.4
GTEX-13JUV-2926-SM-5LZX7
9.3
GTEX-PWO3-0926-SM-2I5EY
9.0
GTEX-11EMC-3226-SM-5EGKW
8.9
GTEX-13IVO-2926-SM-5L3CZ
8.8
GTEX-11O72-2926-SM-5BC4V
8.5
GTEX-11GSP-3226-SM-5986O
8.3
GTEX-11ONC-2926-SM-5P9JM
8.3
GTEX-11GS4-3126-SM-5A5LH
8.1
GTEX-12WSD-3126-SM-5HL7P
8.1
GTEX-13OW8-2826-SM-5L3GC
8.1
GTEX-13JVG-3126-SM-5L3FH
8.0
GTEX-13PVQ-3026-SM-5SI93
7.9
GTEX-1117F-3226-SM-5N9CT
7.7
GTEX-147GR-3026-SM-5S2ML
7.7
GTEX-ZZPT-3026-SM-5GZXH
7.7
GTEX-13OW7-3026-SM-5L3GY
7.5
GTEX-144FL-3026-SM-5O99C
7.5
GTEX-11TTK-2926-SM-5PNYP
7.3
GTEX-12WSA-2926-SM-5EQ4D
5.4
GTEX-1445S-3026-SM-5O9BR
4.8
Show all
Brain - Frontal Cortex (BA9)
Brain - Frontal Cortex (BA9) RPKM: 19.9
Samples: 108
Max RPKM: 47.1
Min RPKM: 4
Std RPKM: 8.7
Median RPKM: 18.7
GTEX-QDT8-0011-R10A-SM-32PKG
47.1
GTEX-QVJO-0011-R10A-SM-2S1QJ
46.2
GTEX-X585-0011-R10A-SM-46MUY
45.6
GTEX-Z93S-0011-R10a-SM-4RGNM
38.6
GTEX-13FHO-0011-R10b-SM-5J2MM
36.0
GTEX-13X6K-0011-R10a-SM-5P9JR
35.9
GTEX-WVLH-0011-R10A-SM-3MJFM
33.5
GTEX-NPJ7-0011-R10A-SM-2I3E5
32.0
GTEX-X4XX-0011-R10B-SM-46MWO
31.6
GTEX-131YS-0011-R10b-SM-5EQ5N
31.1
GTEX-13X6I-0011-R10a-SM-5PNWI
31.1
GTEX-N7MT-0011-R10A-SM-2I3E1
31.1
GTEX-131XH-0011-R10a-SM-5EGLJ
30.6
GTEX-12ZZY-0011-R10b-SM-5HL7W
30.5
GTEX-NPJ8-0011-R10A-SM-2YUMO
30.0
GTEX-WWYW-0011-R10A-SM-3NB35
29.8
GTEX-XLM4-0011-R10A-SM-4AT5P
28.7
GTEX-12WSF-0011-R10a-SM-5LZVH
28.6
GTEX-YFC4-0011-R10a-SM-4SOK5
28.6
GTEX-ZF28-0011-R10a-SM-4WWEH
26.6
GTEX-13O3Q-0011-R10b-SM-5KM39
26.4
GTEX-145MH-0011-R10b-SM-5PNUK
26.1
GTEX-T5JC-0011-R10A-SM-32PM2
25.9
GTEX-Q2AG-0011-R10A-SM-2HMLA
25.6
GTEX-12126-0011-R10b-SM-5BC6T
25.5
GTEX-QMR6-0011-R10A-SM-32PKO
25.3
GTEX-145MG-0011-R10a-SM-5PNWG
25.1
GTEX-12WSM-0011-R10a-SM-5DUWV
24.9
GTEX-YJ89-0011-R10a-SM-4SOK9
24.7
GTEX-13S7M-0011-R10b-SM-5PNZB
24.5
GTEX-12WSE-0011-R10b-SM-5P9JV
23.7
GTEX-WL46-0011-R10A-SM-3MJFQ
23.7
GTEX-NL3H-0011-R10A-SM-2I3E9
23.4
GTEX-P44H-0011-R10A-SM-2XCEK
23.2
GTEX-T6MN-0011-R10A-SM-32QP7
23.2
GTEX-12ZZX-0011-R10b-SM-5DUWK
23.1
GTEX-ZAB4-0011-R10a-SM-4SOKH
23.1
GTEX-WZTO-0011-R10B-SM-4E3KB
23.0
GTEX-132Q8-0011-R10b-SM-5DUWZ
22.7
GTEX-1313W-0011-R10b-SM-5DUXA
22.4
GTEX-14BIN-0011-R10a-SM-5S2UA
21.7
GTEX-13OVL-0011-R10a-SM-5L3GS
21.3
GTEX-145LS-0011-R10a-SM-5PNUQ
21.3
GTEX-139TS-0011-R10a-SM-5K7TU
21.2
GTEX-S7SE-0011-R10A-SM-2XCDF
21.2
GTEX-13NYS-0011-R10a-SM-5MR4S
20.3
GTEX-12WSC-0011-R10a-SM-5GU57
20.2
GTEX-ZVZQ-0011-R10b-SM-51MRT
20.2
GTEX-ZVT3-0011-R10b-SM-57WB6
20.1
GTEX-13RTJ-0011-R10b-SM-5O9CW
19.8
GTEX-14ASI-0011-R10b-SM-5S2VZ
19.7
GTEX-Y8DK-0011-R10A-SM-4SOK1
19.5
GTEX-11H98-0011-R10b-SM-5NQ98
19.3
GTEX-13X6J-0011-R10b-SM-5PNWA
18.8
GTEX-N7MS-0011-R10A-SM-2HMJK
18.6
GTEX-QVUS-0011-R10A-SM-3GIK3
18.6
GTEX-14BIL-0011-R10a-SM-5SI75
18.2
GTEX-ZDXO-0011-R10a-SM-4WWD8
18.1
GTEX-13CZV-0011-R10b-SM-5LZYD
18.0
GTEX-13FLW-0011-R10b-SM-5LZZF
18.0
GTEX-12WSH-0011-R10a-SM-5LZUS
17.9
GTEX-13QIC-0011-R10a-SM-5O9C7
17.7
GTEX-12ZZZ-0011-R10a-SM-5P9HC
17.6
GTEX-NL4W-0011-R10A-SM-2I3DY
16.8
GTEX-13JUV-0011-R10b-SM-5LZXR
16.7
GTEX-13FLV-0011-R10b-SM-5LZZ2
16.6
GTEX-147GR-0011-R10b-SM-5S2UM
16.6
GTEX-13G51-0011-R10b-SM-5LZYF
16.3
GTEX-OXRN-0011-R10A-SM-2I5GC
16.1
GTEX-13OW6-0011-R10a-SM-5L3HE
15.9
GTEX-13FXS-0011-R10a-SM-5J2MA
15.6
GTEX-13SLX-0011-R10a-SM-5P9HV
15.1
GTEX-ZUA1-0011-R10a-SM-51MT6
15.1
GTEX-TSE9-0011-R10A-SM-3DB7O
14.9
GTEX-X4EP-0011-R10B-SM-4QASJ
14.9
GTEX-11ZUS-0011-R10b-SM-5BC79
14.7
GTEX-13OW7-0011-R10a-SM-5L3H3
14.7
GTEX-13OVJ-0011-R10b-SM-5L3HT
14.5
GTEX-13N2G-0011-R10a-SM-5MR34
14.4
GTEX-13OW8-0011-R10a-SM-5L3H6
14.4
GTEX-13O3O-0011-R10a-SM-5LUA9
14.1
GTEX-145LU-0011-R10a-SM-5PNWJ
13.2
GTEX-13QJC-0011-R10a-SM-5SI63
13.1
GTEX-13N1W-0011-R10b-SM-5MR4H
12.8
GTEX-13NYB-0011-R10a-SM-5KM43
12.8
GTEX-XMD1-0011-R10A-SM-4AT4A
12.6
GTEX-11WQC-0011-R10a-SM-57WCT
12.4
GTEX-147F4-0011-R10b-SM-5S2WC
12.2
GTEX-X261-0011-R10B-SM-4E3JT
12.2
GTEX-ZXG5-0011-R10a-SM-57WDD
12.2
GTEX-13SLW-0011-R10a-SM-5S2UI
11.9
GTEX-12ZZW-0011-R10b-SM-5HL9X
11.5
GTEX-11WQK-0011-R10a-SM-5BC6R
11.2
GTEX-ZE7O-0011-R10a-SM-57WAZ
11.0
GTEX-13NZA-0011-R10b-SM-5KM54
10.6
GTEX-12WSD-0011-R10b-SM-5GU79
10.2
GTEX-11GSP-0011-R10a-SM-5NQ7J
9.9
GTEX-13FTZ-0011-R10b-SM-5KLZS
9.3
GTEX-RVPU-0011-R10A-SM-2XCAH
8.6
GTEX-OXRO-0011-R10A-SM-2I5EH
8.2
GTEX-13JVG-0011-R10b-SM-5KM2P
7.7
GTEX-12WSA-0011-R10b-SM-5P9ET
7.4
GTEX-1445S-0011-R10a-SM-5PNWB
7.0
GTEX-13IVO-0011-R10a-SM-5LZY3
6.9
GTEX-ZV68-0011-R10a-SM-51MT7
6.1
GTEX-14753-0011-R10b-SM-5S2WE
5.6
GTEX-1477Z-0011-R10b-SM-5S2RF
5.2
GTEX-131XW-0011-R10a-SM-5DUVA
4.0
Show all
CEREBRAL CORTEX - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.