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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:66.0TPM
GTEx:16.3RPKM

CEREBRAL CORTEX - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Not detected
Neuronal cells:Not detected
Neuropil:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA021324

 

Antibody HPA029915

 

Antibody HPA051038

 

Endothelial cells

Not detected   Not detected   Not detected  

Glial cells

Not detected   Not detected   Not detected  

Neuronal cells

Medium   Not detected   Not detected  

Neuropil

Low   Not detected   Not detected  
     
     
     

CEREBRAL CORTEX - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

66.0

N/A Male, age 5
Sample 1
TPM: 75.3
overview Female, age 40
Sample 2
TPM: 54.7
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 68.0
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

16.3

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 12.9
Samples: 114

Max RPKM: 27.2
Min RPKM: 4.8
Std RPKM: 4
Median RPKM: 12.3
GTEX-13NYC-2826-SM-5K7WR 27.2
GTEX-11OF3-2926-SM-5HL78 26.9
GTEX-X585-3026-SM-46MWF 23.9
GTEX-13FXS-3126-SM-5J2NN 22.6
GTEX-UTHO-3026-SM-3GAFB 21.9
GTEX-PVOW-2526-SM-2XCF7 21.5
GTEX-13X6K-2926-SM-5Q5D5 19.5
GTEX-131YS-3126-SM-5KLYT 19.4
GTEX-QVJO-1426-SM-2S1QY 18.8
GTEX-13FHO-3026-SM-5J1O9 18.0
GTEX-X4XX-3026-SM-3NMB2 18.0
GTEX-XLM4-3026-SM-4AT6L 18.0
GTEX-QMR6-1426-SM-32PLA 17.8
GTEX-T2IS-3026-SM-32QPM 17.1
GTEX-WZTO-2926-SM-3NM9I 16.9
GTEX-WL46-2926-SM-3LK82 16.8
GTEX-NPJ8-1526-SM-2D7VU 16.7
GTEX-WHSE-3026-SM-3P5ZH 16.5
GTEX-11NUK-2926-SM-5A5MD 16.1
GTEX-RNOR-2326-SM-2TF4I 15.8
GTEX-T5JC-2426-SM-3NMDB 15.8
GTEX-11DXY-3226-SM-5GIDE 15.7
GTEX-WWYW-3126-SM-3NB39 15.7
GTEX-14A5I-2926-SM-5Q5CQ 15.6
GTEX-QDT8-2926-SM-32PKC 15.6
GTEX-ZUA1-3026-SM-59HJC 15.6
GTEX-WVLH-3026-SM-3MJG9 15.4
GTEX-ZAK1-3026-SM-5S2MJ 15.4
GTEX-145MH-3026-SM-5Q5DZ 15.3
GTEX-13NYS-3126-SM-5KLYV 14.7
GTEX-TSE9-3026-SM-3DB76 14.4
GTEX-139T8-1026-SM-5J2MC 14.3
GTEX-Y8DK-0826-SM-4TT3T 14.3
GTEX-YFC4-3126-SM-5PNV6 14.3
GTEX-12ZZX-2926-SM-5GCOQ 14.2
GTEX-R55F-1326-SM-5S2V4 14.2
GTEX-Z93S-2926-SM-57WB9 14.2
GTEX-111FC-3126-SM-5GZZ2 13.8
GTEX-1192X-3126-SM-5N9BY 13.7
GTEX-14ASI-3026-SM-5S2PN 13.7
GTEX-NPJ7-2726-SM-2I3FT 13.7
GTEX-11ZUS-2926-SM-5FQSL 13.6
GTEX-13FLW-1426-SM-5K7YE 13.6
GTEX-13O3Q-2926-SM-5KM45 13.6
GTEX-145LS-3126-SM-5Q5BY 13.6
GTEX-144GL-3026-SM-5Q5CW 13.3
GTEX-QVUS-2826-SM-3GADB 13.3
GTEX-14BMV-3026-SM-5S2PQ 13.2
GTEX-11DXW-1126-SM-5H12Q 13.1
GTEX-11NV4-2126-SM-5N9DS 13.1
GTEX-RU72-3026-SM-5SI7Y 13.1
GTEX-ZE7O-3126-SM-5HL5X 13.1
GTEX-131XW-3126-SM-5LZUC 13.0
GTEX-13PL6-3126-SM-5LUAR 12.8
GTEX-1313W-3126-SM-5LZUI 12.7
GTEX-11PRG-2926-SM-5987A 12.6
GTEX-13FHP-3026-SM-5IJBS 12.4
GTEX-ZYFD-3026-SM-5E44C 12.3
GTEX-13OVJ-2826-SM-5L3GW 12.2
GTEX-117XS-3026-SM-5N9CA 12.1
GTEX-YJ89-3026-SM-5IFJI 12.0
GTEX-13SLX-3126-SM-5S2Q5 11.9
GTEX-145MG-3026-SM-5RQJA 11.7
GTEX-11EI6-3026-SM-5GZZO 11.6
GTEX-12ZZY-3026-SM-5GCOU 11.6
GTEX-11GSO-2926-SM-5HL73 11.5
GTEX-13OW6-3026-SM-5J2MI 11.5
GTEX-12126-1026-SM-5P9JJ 11.4
GTEX-T6MN-2626-SM-32PMQ 11.4
GTEX-12WSH-3026-SM-5CVNI 11.1
GTEX-12ZZZ-3026-SM-5BC67 11.1
GTEX-13NYB-3026-SM-5IJD7 11.1
GTEX-ZAJG-3126-SM-5HL9J 11.1
GTEX-11WQK-3026-SM-5EQL6 11.0
GTEX-ZVT3-3026-SM-5E43N 11.0
GTEX-13VXU-2926-SM-5LU5C 10.9
GTEX-13OVH-3026-SM-5MR4N 10.7
GTEX-13QIC-2926-SM-5J2NF 10.7
GTEX-Y111-2726-SM-4TT3N 10.7
GTEX-132Q8-3026-SM-5PNVG 10.6
GTEX-1128S-2726-SM-5H12C 10.5
GTEX-13X6J-3026-SM-5Q5CU 10.5
GTEX-Q2AG-2926-SM-2HMJ3 10.5
GTEX-1399T-3026-SM-5KLZC 10.4
GTEX-13S7M-3126-SM-5RQJQ 10.4
GTEX-XOTO-3026-SM-4B65M 10.4
GTEX-12WSC-3026-SM-5GCNF 10.3
GTEX-13G51-3026-SM-5IJB8 10.3
GTEX-OXRN-2426-SM-2I5EQ 10.3
GTEX-N7MT-1126-SM-5SI7V 10.1
GTEX-11OC5-0726-SM-5P9JK 9.9
GTEX-13O3O-3126-SM-5KM3H 9.5
GTEX-12ZZW-2926-SM-5LZUP 9.4
GTEX-145MF-2726-SM-5O995 9.4
GTEX-13JUV-2926-SM-5LZX7 9.3
GTEX-PWO3-0926-SM-2I5EY 9.0
GTEX-11EMC-3226-SM-5EGKW 8.9
GTEX-13IVO-2926-SM-5L3CZ 8.8
GTEX-11O72-2926-SM-5BC4V 8.5
GTEX-11GSP-3226-SM-5986O 8.3
GTEX-11ONC-2926-SM-5P9JM 8.3
GTEX-11GS4-3126-SM-5A5LH 8.1
GTEX-12WSD-3126-SM-5HL7P 8.1
GTEX-13OW8-2826-SM-5L3GC 8.1
GTEX-13JVG-3126-SM-5L3FH 8.0
GTEX-13PVQ-3026-SM-5SI93 7.9
GTEX-1117F-3226-SM-5N9CT 7.7
GTEX-147GR-3026-SM-5S2ML 7.7
GTEX-ZZPT-3026-SM-5GZXH 7.7
GTEX-13OW7-3026-SM-5L3GY 7.5
GTEX-144FL-3026-SM-5O99C 7.5
GTEX-11TTK-2926-SM-5PNYP 7.3
GTEX-12WSA-2926-SM-5EQ4D 5.4
GTEX-1445S-3026-SM-5O9BR 4.8
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 19.9
Samples: 108

Max RPKM: 47.1
Min RPKM: 4
Std RPKM: 8.7
Median RPKM: 18.7
GTEX-QDT8-0011-R10A-SM-32PKG 47.1
GTEX-QVJO-0011-R10A-SM-2S1QJ 46.2
GTEX-X585-0011-R10A-SM-46MUY 45.6
GTEX-Z93S-0011-R10a-SM-4RGNM 38.6
GTEX-13FHO-0011-R10b-SM-5J2MM 36.0
GTEX-13X6K-0011-R10a-SM-5P9JR 35.9
GTEX-WVLH-0011-R10A-SM-3MJFM 33.5
GTEX-NPJ7-0011-R10A-SM-2I3E5 32.0
GTEX-X4XX-0011-R10B-SM-46MWO 31.6
GTEX-131YS-0011-R10b-SM-5EQ5N 31.1
GTEX-13X6I-0011-R10a-SM-5PNWI 31.1
GTEX-N7MT-0011-R10A-SM-2I3E1 31.1
GTEX-131XH-0011-R10a-SM-5EGLJ 30.6
GTEX-12ZZY-0011-R10b-SM-5HL7W 30.5
GTEX-NPJ8-0011-R10A-SM-2YUMO 30.0
GTEX-WWYW-0011-R10A-SM-3NB35 29.8
GTEX-XLM4-0011-R10A-SM-4AT5P 28.7
GTEX-12WSF-0011-R10a-SM-5LZVH 28.6
GTEX-YFC4-0011-R10a-SM-4SOK5 28.6
GTEX-ZF28-0011-R10a-SM-4WWEH 26.6
GTEX-13O3Q-0011-R10b-SM-5KM39 26.4
GTEX-145MH-0011-R10b-SM-5PNUK 26.1
GTEX-T5JC-0011-R10A-SM-32PM2 25.9
GTEX-Q2AG-0011-R10A-SM-2HMLA 25.6
GTEX-12126-0011-R10b-SM-5BC6T 25.5
GTEX-QMR6-0011-R10A-SM-32PKO 25.3
GTEX-145MG-0011-R10a-SM-5PNWG 25.1
GTEX-12WSM-0011-R10a-SM-5DUWV 24.9
GTEX-YJ89-0011-R10a-SM-4SOK9 24.7
GTEX-13S7M-0011-R10b-SM-5PNZB 24.5
GTEX-12WSE-0011-R10b-SM-5P9JV 23.7
GTEX-WL46-0011-R10A-SM-3MJFQ 23.7
GTEX-NL3H-0011-R10A-SM-2I3E9 23.4
GTEX-P44H-0011-R10A-SM-2XCEK 23.2
GTEX-T6MN-0011-R10A-SM-32QP7 23.2
GTEX-12ZZX-0011-R10b-SM-5DUWK 23.1
GTEX-ZAB4-0011-R10a-SM-4SOKH 23.1
GTEX-WZTO-0011-R10B-SM-4E3KB 23.0
GTEX-132Q8-0011-R10b-SM-5DUWZ 22.7
GTEX-1313W-0011-R10b-SM-5DUXA 22.4
GTEX-14BIN-0011-R10a-SM-5S2UA 21.7
GTEX-13OVL-0011-R10a-SM-5L3GS 21.3
GTEX-145LS-0011-R10a-SM-5PNUQ 21.3
GTEX-139TS-0011-R10a-SM-5K7TU 21.2
GTEX-S7SE-0011-R10A-SM-2XCDF 21.2
GTEX-13NYS-0011-R10a-SM-5MR4S 20.3
GTEX-12WSC-0011-R10a-SM-5GU57 20.2
GTEX-ZVZQ-0011-R10b-SM-51MRT 20.2
GTEX-ZVT3-0011-R10b-SM-57WB6 20.1
GTEX-13RTJ-0011-R10b-SM-5O9CW 19.8
GTEX-14ASI-0011-R10b-SM-5S2VZ 19.7
GTEX-Y8DK-0011-R10A-SM-4SOK1 19.5
GTEX-11H98-0011-R10b-SM-5NQ98 19.3
GTEX-13X6J-0011-R10b-SM-5PNWA 18.8
GTEX-N7MS-0011-R10A-SM-2HMJK 18.6
GTEX-QVUS-0011-R10A-SM-3GIK3 18.6
GTEX-14BIL-0011-R10a-SM-5SI75 18.2
GTEX-ZDXO-0011-R10a-SM-4WWD8 18.1
GTEX-13CZV-0011-R10b-SM-5LZYD 18.0
GTEX-13FLW-0011-R10b-SM-5LZZF 18.0
GTEX-12WSH-0011-R10a-SM-5LZUS 17.9
GTEX-13QIC-0011-R10a-SM-5O9C7 17.7
GTEX-12ZZZ-0011-R10a-SM-5P9HC 17.6
GTEX-NL4W-0011-R10A-SM-2I3DY 16.8
GTEX-13JUV-0011-R10b-SM-5LZXR 16.7
GTEX-13FLV-0011-R10b-SM-5LZZ2 16.6
GTEX-147GR-0011-R10b-SM-5S2UM 16.6
GTEX-13G51-0011-R10b-SM-5LZYF 16.3
GTEX-OXRN-0011-R10A-SM-2I5GC 16.1
GTEX-13OW6-0011-R10a-SM-5L3HE 15.9
GTEX-13FXS-0011-R10a-SM-5J2MA 15.6
GTEX-13SLX-0011-R10a-SM-5P9HV 15.1
GTEX-ZUA1-0011-R10a-SM-51MT6 15.1
GTEX-TSE9-0011-R10A-SM-3DB7O 14.9
GTEX-X4EP-0011-R10B-SM-4QASJ 14.9
GTEX-11ZUS-0011-R10b-SM-5BC79 14.7
GTEX-13OW7-0011-R10a-SM-5L3H3 14.7
GTEX-13OVJ-0011-R10b-SM-5L3HT 14.5
GTEX-13N2G-0011-R10a-SM-5MR34 14.4
GTEX-13OW8-0011-R10a-SM-5L3H6 14.4
GTEX-13O3O-0011-R10a-SM-5LUA9 14.1
GTEX-145LU-0011-R10a-SM-5PNWJ 13.2
GTEX-13QJC-0011-R10a-SM-5SI63 13.1
GTEX-13N1W-0011-R10b-SM-5MR4H 12.8
GTEX-13NYB-0011-R10a-SM-5KM43 12.8
GTEX-XMD1-0011-R10A-SM-4AT4A 12.6
GTEX-11WQC-0011-R10a-SM-57WCT 12.4
GTEX-147F4-0011-R10b-SM-5S2WC 12.2
GTEX-X261-0011-R10B-SM-4E3JT 12.2
GTEX-ZXG5-0011-R10a-SM-57WDD 12.2
GTEX-13SLW-0011-R10a-SM-5S2UI 11.9
GTEX-12ZZW-0011-R10b-SM-5HL9X 11.5
GTEX-11WQK-0011-R10a-SM-5BC6R 11.2
GTEX-ZE7O-0011-R10a-SM-57WAZ 11.0
GTEX-13NZA-0011-R10b-SM-5KM54 10.6
GTEX-12WSD-0011-R10b-SM-5GU79 10.2
GTEX-11GSP-0011-R10a-SM-5NQ7J 9.9
GTEX-13FTZ-0011-R10b-SM-5KLZS 9.3
GTEX-RVPU-0011-R10A-SM-2XCAH 8.6
GTEX-OXRO-0011-R10A-SM-2I5EH 8.2
GTEX-13JVG-0011-R10b-SM-5KM2P 7.7
GTEX-12WSA-0011-R10b-SM-5P9ET 7.4
GTEX-1445S-0011-R10a-SM-5PNWB 7.0
GTEX-13IVO-0011-R10a-SM-5LZY3 6.9
GTEX-ZV68-0011-R10a-SM-51MT7 6.1
GTEX-14753-0011-R10b-SM-5S2WE 5.6
GTEX-1477Z-0011-R10b-SM-5S2RF 5.2
GTEX-131XW-0011-R10a-SM-5DUVA 4.0
Show all

CEREBRAL CORTEX - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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