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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA021147

 

Antibody HPA061464

 

Antibody CAB000059

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
  DakoCytomation
 

Product name

HPA021147   HPA061464   A0398  

Host species

Rabbit   Rabbit   Rabbit  

Clonality

pAb   pAb   pAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G  

Other gene match

     

Released in version

5   13   1  

References

     

VALIDATION SUMMARY

 
 

Antibody HPA021147

 

Antibody HPA061464

 

Antibody CAB000059

 
Immunocytochemistry

  Supported    
Immunohistochemistry


Validated
 

Validated
 

Validated
 
Western blot

Supported   Uncertain   Uncertain  
Protein array

Approved   Supported    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA021147

 

Antibody HPA061464

 

Antibody CAB000059

 

Standard validation

  Supported    

     

Figure description

  Immunofluorescent staining of human cell line SiHa shows localization to nucleus & vesicles.    

Antibody dilution

  1:66    

Literature conformity

  The subcellular location is supported by literature.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA021147

 

Antibody HPA061464

 

Antibody CAB000059

 

Formal validation: Orthogonal

Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 

 

 

 
 

 

 
 

 

 

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 43 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 42 cell lines.  
 

Formal validation: Orthogonal

Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
     

 

 

     

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 37 tissues.      
 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunohistochemical staining of human bone marrow shows moderate positivity in hematopoietic cells.   Immunohistochemical staining of human bone marrow shows strong cytoplasmic positivity in hematopoietic cells.   Immunohistochemical staining of human spleen shows strong cytoplasmic positivity in a subset of cells in red pulp.  

Expression

RNA: detected in 9 tissues
Protein: detected in 5 cell types
  RNA: detected in 9 tissues
Protein: detected in 7 cell types
  RNA: detected in 9 tissues
Protein: detected in 10 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH9  

Antibody dilution

1:9000   1:3500   1:3000  

Literature conformity

Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA021147

 

Antibody HPA061464

 

Antibody CAB000059

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
  Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
 

     

Figure description

Lane 1: Marker [kDa] 230, 130, 95, 72, 56, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
     

Target mass (kDa)

83.9   83.9   83.9, 9.9  

Antibody dilution

1:250   1:200   1:500  

PROTEIN ARRAY

 
 

Antibody HPA021147

 

Antibody HPA061464

 

Antibody CAB000059

 

Standard validation

Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
  Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:500   1:2650    

ANTIGEN INFORMATION

 
 

Antibody HPA021147

 

Antibody HPA061464

 

Antibody CAB000059

 

Antigen

Recombinant protein fragment   Recombinant protein fragment   Native protein  

Length (aa)

140   42    

Antigen sequence

SRDHGLPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNI
DIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQ
RQALAQISLPRIICDNTGITTVSKNNIFMSNSYPRDFVNC
 
GAAPAVLGEVDTSLVLSSMEEAKQLVDKAYKERRESIKQRLR
   

Matching transcripts

MPO-001 - ENSP00000225275 [100%]
  MPO-001 - ENSP00000225275 [100%]
   

Other gene match

     
ANTIGEN VIEW
MPO-001
 

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